Herbaspirillum rubrisubalbicans: Hrubri_3475
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Entry
Hrubri_3475 CDS
T04238
Symbol
cyaB
Name
(GenBank) Bacteriocin/lantibiotic (cyclolysin-type) secretion ABC transporter protein
KO
K11004
ATP-binding cassette, subfamily B, bacterial HlyB/CyaB
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb02010
ABC transporters
hrb03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Hrubri_3475 (cyaB)
03070 Bacterial secretion system
Hrubri_3475 (cyaB)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hrb02000
]
Hrubri_3475 (cyaB)
02044 Secretion system [BR:
hrb02044
]
Hrubri_3475 (cyaB)
Transporters [BR:
hrb02000
]
ABC transporters, eukaryotic type
ABCB (MDR/TAP) subfamily
ABCB-BAC subgroup
Hrubri_3475 (cyaB)
Secretion system [BR:
hrb02044
]
Type I secretion system
alpha-Hemolysin/cyclolysin transporter
Hrubri_3475 (cyaB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
Peptidase_C39
SMC_N
ABC_ATPase
AAA_29
AAA_16
NB-ARC
MeaB
AAA_18
AAA_22
RsgA_GTPase
DUF87
Motif
Other DBs
NCBI-ProteinID:
ALU90634
LinkDB
All DBs
Position
4069102..4071264
Genome browser
AA seq
720 aa
AA seq
DB search
MNDQENHPETPDSGLLCLLMMARLHDIAADPHQLRHEFGREPFTIQTLLLAARKLGLSAR
CVRQDPARLERMPLPAIAVDRDGKFFLIGKIDRSQAIWRILVQRPGERPAIMLRPAFDEC
WSGQVIFMTSKASFAGSMSKFDFTWFIPAVIKYRKALGEVLLISLALQLIGLCTPLFFQV
VMDKVLVNHAMKTLNVIAIGLIAATLFEAILGGIRTALFSHTSSKIDVELGSKLFAHLLS
LPITYFQSRRAGDSIARIRELENIRSFLTSNAMTLLLDLVFSFVFLGVMLWYSVTLSLIV
LASIPLYLGLSFVFTPILRARLDDKFNKSAENQAFLVESLTGMDTIKSLAVEPRWQQKWD
KQLAAYVSAGLSTANIGLLASGSVSLVSKLVTAAIMWLGATLVIDQQLTVGELVAFNMLA
GQVAAPVLRLAQLWNDFQQVGISMSRLGDVLDTRPEVTGKKTRLPRLSGAIIFDQVSFRY
RPETSEVLRALTLNIRPGEVVGIVGRSGSGKSTLTKLVQRLYVCDRGKVMIDGQDLAVID
TASLRQQIGVVLQENMLFSRSIRDNIALTDPSLPIEAVIAAAKLAGAHEFICELPEAYDT
LVGEHGTGLSGGQRQRIAIARALISNPAILIFDEATSALDYESEKIIQDNMRQICAGRTV
LIIAHRLSAVRDAHRIIVLDKGQIVESGRHEELLRKPGGLYAHLHGLQMTQGAASTSPVG
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgaccaagagaatcatcctgaaactcccgatagtggcctgctgtgcctgctcatg
atggccaggctgcacgacatcgctgcagatccgcatcagctgcggcatgagtttggccgc
gagcccttcaccatccagaccctgctgctggccgccaggaaactggggctgtccgcccgc
tgcgtcaggcaagacccggcccgcctggaacggatgccgctgccggccatcgccgtggac
cgtgacggcaagttcttcctgatcggaaagatcgaccgcagccaagccatctggcgcatt
cttgtgcaacgcccgggcgagcggcctgccatcatgctgcgccctgccttcgatgaatgc
tggagcggccaggtgatcttcatgaccagcaaggcgagctttgcgggcagcatgagcaag
tttgatttcacctggttcatcccggcggtgatcaagtatcgcaaggcgctgggggaagtg
ctgctgatctcgctggcgctgcagcttatcggcttgtgtaccccgctgttctttcaggtg
gtgatggacaaggtactggtcaatcacgccatgaaaacgctcaacgtgatcgccatcgga
ctgatcgccgcaaccttgttcgaagccatcctgggcggcatccggaccgccttgttttcc
catacgagcagcaagatcgatgtggaattgggctccaagttgttcgcgcacttgctgagc
ttgcccatcacctatttccagtcgcggcgcgctggcgactccatcgcgcgcatccgagag
ctggagaacatccgctccttccttaccagcaatgccatgaccctgctgctggatctggtg
ttctccttcgtcttcctcggcgtgatgctgtggtacagcgtcaccctgtccctgatcgtg
ctggcgtcgattccactgtatctgggactgtcctttgtgttcacgcccatcctgcgggcc
aggctggacgacaagttcaacaagagcgcggaaaaccaagcgttcctggtggagtcgctc
acgggcatggatacgatcaagtccctggccgtcgagccacgctggcagcagaagtgggac
aagcaattggccgcttacgtcagcgcggggctcagtaccgctaacatcggcctgctggca
agcggcagcgtcagcctggtcagcaaactggtcacggctgccatcatgtggctgggcgcc
accctggtgatcgaccagcaactcacggtcggcgaactggtggccttcaacatgctggcg
ggccaggtggccgctcccgtgctgaggctggcccagctgtggaatgattttcagcaggta
gggatctcgatgagccggctgggtgacgtactggatacccgccccgaagtcaccggcaag
aagacccgcttgccgaggctatccggcgcgatcatctttgaccaggtttcgtttcgatat
cgccccgaaacctcggaggtactgcgcgcgctcaccctgaatattcggcctggcgaggtc
gttggcatcgtgggccgttccggctcgggcaaaagcaccctgaccaagctggtccagcgg
ctctatgtctgtgatcgcggcaaggtcatgatcgatggacaggatctggccgtcatcgat
accgcctcgctgcgccagcagatcggcgtggtattgcaggaaaacatgctgttctcgcgc
tccatccgggacaacatcgccctcaccgatccatccctgccgatagaggctgtcatcgct
gcggcaaagctggcaggcgctcatgaattcatctgcgaattgccggaggcctatgacacc
ctggtcggagaacatgggaccggcttgtccggcggacagcggcagcgtatcgccatcgcc
cgtgccctgatttcgaacccggccatcctcatcttcgacgaagccaccagcgcactcgac
tacgagtccgaaaaaatcattcaggacaacatgcgccagatctgcgcaggaagaaccgtc
ctgatcatcgcacatcgtctctcggcagtacgcgatgcccatcgcatcatcgtcctcgac
aagggccagatcgttgaaagcgggcgccacgaagagctgctgcgcaagccgggtggcctc
tatgcgcatctgcatggtctgcaaatgacacaaggcgccgccagcacttccccggtgggt
tga
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