Herbaspirillum rubrisubalbicans: Hrubri_3478
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Entry
Hrubri_3478 CDS
T04238
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase protein
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrb03019
]
Hrubri_3478 (hrpA)
Enzymes [BR:
hrb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Hrubri_3478 (hrpA)
Messenger RNA biogenesis [BR:
hrb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Hrubri_3478 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
Helicase_C
OB_NTP_bind
HA2_C
DEAD
WHD_HA2
AAA_22
AAA_19
T2SSE
nSTAND3
nSTAND_NTPase5
NACHT
DUF5669
ResIII
SLFN-g3_helicase
TsaE
AAA_25
SRP54
Motif
Other DBs
NCBI-ProteinID:
ALU90637
LinkDB
All DBs
Position
complement(4074108..4078163)
Genome browser
AA seq
1351 aa
AA seq
DB search
MSVTKAPNTPPGAQPQQTPQQDRGRGPREPRGPRRAEPASEAAPPVRNPLPPVTFPEELP
VSGRRHEIAEALRRHQVIIVSGETGSGKTTQLPKICLELGRGAKGLIGHTQPRRIAASST
AKRIAQELNSPPGELVGYKVRFNDTLSKGAWIKLMTDGILLAETQTDPLLRQYDTIIIDE
AHERSLNIDFLLGYLKQLLPKRPDLKIIITSATIDADRFARHFGRELKGELVPAPVIEVS
GRLYPVEIRYRPIDNADRSGVSTEVAQARARAEGRASQAQKDREQRDLMDAVVDAVDELA
RIGSGDVLVFLPGEREIRDAAEALRKHHPPHVEILPLFARLSAQEQERVFKTSNARRIVL
ATNVAETSLTVPGIRYVVDAGLARVKRYSYRNKVEQLQIEPVAQSAANQRAGRCGRVAAG
VCIRLYDEQDFLQRPKFTDPEILRSSLASVILRMKSLHLTDVESFPFIEPPLGRAIADGY
QLLQELGAVEEQGGVNRLTPLGKQLARLPLDPRVGRMILAGRDNACLTELLIIAAAVSVQ
DPRDRPMDAQNAADNAHKKFADEKSEFASYLKIWKWFEDAIAHKKSNRQLQEHCRENFLS
QLRLREWRDVHSQLLTIVKEQGWRLNEAAATYDQLHLALLTGLLGNVGFKSDDDAQYLGA
RGIKFNIWPGAHLTKKPGRWVMAAELVDTARLYARCVANIQPEWLEKLGGHLLKKSWGEP
RWEKRAAQVTASERATLYGLVVYSQRRINYGNINPVEAREIFIRDALVGGDFETRAPFFA
HNQKLVREIENLEHKSRRLDVLVDDELIIGFYDKLIPQDICNGVDFEKWHKQATAADPKL
LYLNRDDLMRHEAAGVTTELFPKTMNVAGIAMALSYHFEPGAARDGVTLTVPLYALNQVS
ADRCEWLVPGMLKEKVHLLLKSLPQKLRRHCVPLPDYAARFCERMEERKTFGRGNLIDAI
IADIREQITLLVKPSDFKQETLSAHHAMNFKIVDEHGRQLEMGRNLAALQAEFGGQARQQ
FQKLAEQVAIAPREDEDSAAPLPAAAAGKGGATIATPAAPASVGEYSNLTSWSFGELPEL
LEITRGSGKQAQTLIGFPALVDRLTHCDLEVFDDPTEAARFHYAGLRRLFALQMKEQLKY
LEKNIPGLQQMGMQFMALGTQEELREQILNAGLERAFLQDPLPRNADEFNRRRDEGKARL
GLLVNEIARLCGLILAEYHSLPKKLQGIKAHAQAAADMQAQLSQLVGKRFVAETDYGNLS
HYPRYLKAINVRLDKLRADPARDTRLLAEWNSVALPYQRGLKDRAGRADPKMTEFRWMLE
ELRVSLYAQELKTPMPVSVKRLQKVWESMQR
NT seq
4056 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaccaaagcacccaacactccccctggcgcccagccccagcagaccccgcaa
caggatcgtggacgcggcccgcgcgagccgcgtggaccccgccgcgccgagcctgccagc
gaggccgcgccgccggtacgcaatccgctgcccccggtgaccttcccggaagagctgccg
gtctccggccgccgccatgaaatcgccgaggcgctgcgccggcaccaggtcatcatcgtc
agcggtgagaccggttccggcaagaccacccagctccccaagatctgcctggaactgggc
cgtggcgccaagggcttgatcggccacacccagccgcgccgtatcgccgcctcttccacc
gccaagcgcatcgcccaggaattgaattcgccaccgggcgaactggtgggctacaaggtc
cgcttcaacgacaccctgtccaagggcgcctggatcaagctgatgaccgacggcatcctg
ctggccgagacccagaccgatccgctcttacgccagtacgacaccatcatcatcgacgag
gcgcatgaacgcagccttaacatcgactttctgctgggctatctgaagcagttgctgccc
aagcgtcccgacctgaagatcatcatcacctcggccaccatcgacgctgaccgcttcgcc
cgccatttcgggcgtgagctcaagggcgagctggtgccggcgccggtgatcgaggtctcc
ggccgcctctacccggtggaaatccgttatcgccccatcgacaatgccgaccgcagcggc
gtctccaccgaagtggcgcaagcccgtgcgcgtgccgagggacgcgccagccaggcccag
aaggaccgcgaacagcgcgacctgatggatgccgtggtcgatgccgtggatgaactggcg
cgcatcggttcgggcgacgtgttggtgttcctgccgggcgaacgtgaaatccgcgacgcc
gccgaagcgctgcgcaagcatcatccaccgcatgtggaaatcctgccgctgtttgcgcgc
ctgtcggcgcaggagcaggagcgcgtcttcaagaccagcaacgcccgtcgcatcgtgctg
gccaccaatgtggcggaaacttcactgaccgtgcccgggatccgctatgtggtcgatgcc
ggtctggcgcgggtgaagcgttacagctaccgcaacaaggtcgagcaattgcagatcgag
ccggtggcgcagtcggctgccaaccagcgcgccggtcgctgcggccgggtggccgcgggg
gtgtgcatccgtctgtatgacgaacaggatttcctgcaacgtcccaagttcaccgatccc
gagattctgcgttcgtcgctggcctcggtcatcctgcgcatgaagtcgctgcacctgacg
gacgtggagagcttccccttcatcgagccgccgctggggcgcgccattgccgatggctac
cagttgctgcaggaactgggcgcagtcgaagagcagggcggcgtcaatcgcttgacaccc
ttgggcaagcaactggcgcgcctgccattggacccgcgcgtgggccgcatgatcctggcc
ggccgcgacaatgcctgcctgaccgaattgctcatcatcgccgccgcggtgtcggtgcaa
gacccgcgcgaccggcccatggatgcgcagaatgcggccgataatgcgcacaagaaattt
gccgatgaaaaatccgaattcgccagttacctgaaaatctggaagtggttcgaagacgcc
atcgctcacaagaaatcgaatcgccagttgcaggaacactgccgcgagaatttcctgtcg
caactgcgcctgcgcgaatggcgcgatgtccattcgcaactgctgaccatcgtcaaggaa
cagggctggcgcttgaacgaagcagcggccacttacgaccaattgcacctggccctgctg
accggcttgttgggcaacgtcggtttcaagagcgacgacgatgcgcaatacctgggcgcg
cgcggcatcaagttcaacatctggcccggcgcccatctgaccaagaaacccggtcgctgg
gtgatggcggccgagctggtcgacaccgcccgcctgtatgcccgttgcgtggccaacatc
cagcccgaatggctggaaaaactgggcggccacctgttgaagaaatcctggggcgagccg
cgctgggaaaaacgcgccgcgcaagtgacggcctctgagcgcgccaccttgtatggcctg
gtggtgtacagccagcgccgcatcaactacggcaacatcaatccggttgaggcgcgcgag
atcttcatccgcgatgccctggtcggtggcgacttcgagacccgcgccccgttcttcgcg
cacaaccagaagctggtgcgcgaaatcgaaaacctggaacacaagtcgcgccgcctggac
gtgctggtggacgatgaattgatcatcggtttctacgacaagctgatcccgcaggacatc
tgcaatggcgtggacttcgagaagtggcacaagcaggccacggcagccgaccccaagttg
ctctacctgaaccgcgacgacctgatgcgtcacgaggctgcgggcgtgaccaccgagctc
ttccccaagaccatgaatgtggcgggtattgccatggcgctgtcctatcacttcgaaccg
ggtgccgcgcgcgatggggtgacgctgaccgtgccgctgtatgcattgaaccaggtctcc
gcggatcgttgcgagtggctggtgccgggcatgttgaaggaaaaagtccacctgctgttg
aagtctctgccgcaaaagctgcgccgccactgtgtcccgctgcccgattatgccgcgcgc
ttctgcgagcgcatggaagagcgcaagacctttggtcgcggcaacctgatcgacgccatc
atcgccgacatccgcgagcagatcacgctcctggtcaagcccagcgacttcaagcaggag
acgctctcggcccaccatgcgatgaacttcaagatcgtcgatgaacacggacggcaactg
gagatgggccgcaacctggccgcgctgcaagccgaattcggcggtcaggcacgccagcag
ttccagaagctggccgagcaggtggccattgccccgcgtgaggacgaggatagtgcggca
cctttgcctgcggccgccgcaggcaaggggggcgcgaccatcgcgacaccggctgcgcct
gcttcggtgggcgagtacagcaatctcaccagctggagctttggtgaattgcccgagctg
ctggagatcacgcgtggcagcggcaagcaggcgcagacgctgatcggcttcccggcgctg
gtggacaggctcacgcattgcgacctggaagtgttcgatgaccccaccgaggctgcgcgt
ttccattacgccggtctgcgtcgcctgttcgccctgcagatgaaggaacagctcaagtac
ctggaaaagaacatcccgggtctgcagcagatggggatgcagttcatggccctgggcacg
caggaagagttgcgtgaacagatattgaatgccggcctggaacgcgccttcctgcaagac
ccgctgccgcgcaacgccgacgaattcaaccgtcgccgcgatgagggtaaggcgcggctg
ggtttgctggtcaatgaaattgcccgcctgtgtggattgatcctggccgagtaccactcg
ctgcccaagaagctgcaaggcatcaaggcccacgcccaggcggcggccgacatgcaggcg
caattgtcgcaactggtgggcaagcgtttcgtggccgagaccgactatggcaacctgagc
cactatccgcgttacctcaaggccatcaacgtgcggctggacaagttgcgcgccgacccg
gcccgcgatacgcgcttgctggcagagtggaattcggtggccctgccgtatcagcgtggt
ctcaaggaccgcgctggccgtgccgatcccaagatgacggaatttcgttggatgctggag
gaattgcgggtgtccctgtacgcgcaggaattgaagacccccatgccggtgtcggtgaag
cgcttgcagaaggtgtgggagagtatgcagcggtga
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