Herbaspirillum rubrisubalbicans: Hrubri_3537
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Entry
Hrubri_3537 CDS
T04238
Name
(GenBank) Lipid A core - O-antigen ligase protein
KO
K02847
O-antigen ligase [EC:
2.4.99.26
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb00540
Lipopolysaccharide biosynthesis
hrb01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
Hrubri_3537
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
hrb01005
]
Hrubri_3537
Enzymes [BR:
hrb01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.26 O-antigen ligase
Hrubri_3537
Lipopolysaccharide biosynthesis proteins [BR:
hrb01005
]
Core region
Hrubri_3537
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Wzy_C
YGL204C
DUF4212
Motif
Other DBs
NCBI-ProteinID:
ALU90694
LinkDB
All DBs
Position
complement(4155092..4156300)
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AA seq
402 aa
AA seq
DB search
MGSFTSFAVFLFSAISLIIPSGFSVGAILLTLGSFTLVNKSIRSTLSREDRLLIAVLVIY
FLVTVTMHLYHHESLKEYDLPLRFLLAAMALLTLRAYPPSPAGFWSGLILGGVGSCLFAG
WQYFAHGARANGYTNAIQYGDISFIIGILCLTGFTWALQQRSARTWVILLILGGISGLLG
SLFTGSRGSWVGLPVCLLILCVYYSRSIQPRYVWGGLAALIAAIVVVFAVLPSTDYRARV
TLAFSEASTYMHKKDADSSIGTRMEMWRTGAMAAAESPLLGIGKAGFVAWESKQIEAGKV
NPLMSGNNHVYNEWLDALVKRGIPGLLVLLALYFIPLRLFIAHLKSAPAHAKPYAVGGIL
LIVNFIGFGFSQVFMAHNSGVMTLGFTMVILWGLLRGQEERH
NT seq
1209 nt
NT seq
+upstream
nt +downstream
nt
atgggcagctttacttcgttcgcagtctttctcttttctgccatttcactgatcatcccc
agcggcttttcggtgggggccatcctgctgaccttgggcagctttactctggtcaacaaa
agcatccgttctaccctaagccgggaagatcgtctgctgatcgcggtactggtgatctac
ttcctggtcaccgtgaccatgcacctgtaccaccacgaaagcctcaaggaatatgacctg
ccgctgcgcttcctgctggcagccatggcgctgctgaccttgcgcgcctatccgccgtcg
ccggcgggtttctggtctggtctgatcctggggggtgtcggctcctgcctgtttgccggc
tggcagtactttgcgcatggtgcgcgcgccaacggttataccaatgcgatccagtatggc
gatatcagcttcatcatcggcatcctctgcctgaccggtttcacctgggcgctgcagcag
cgctcggcgcggacctgggtgatcctgctgatcttgggcggtatctcgggtctgctgggt
tccttgtttaccggcagtcgcggcagctgggtgggcttgccagtgtgtctgctcattctg
tgcgtctactacagccgctcgatccagccgcgttatgtctggggtggcctggccgcgttg
atcgcggccatcgtggtggtgttcgcggtactgccgagcacggattaccgggcgcgggtg
acgctggccttctccgaggcctcgacctacatgcacaagaaagatgccgacagctccatt
ggtacgcgcatggaaatgtggcgtaccggtgccatggccgcagccgagtcgcccctgtta
ggcataggcaaggccggtttcgtggcctgggaaagcaagcagatcgaagcgggcaaggtc
aacccgttgatgtccggcaataaccacgtctacaacgaatggctcgatgccctggtcaag
cgcggtattcctggcctgctggtgctgctggcgctgtatttcatcccgctgcgcctgttc
attgcccacctgaagtcggcccctgcccacgccaagccctacgccgtgggcggcatcctg
ctcatcgtcaacttcatcggcttcggtttttcccaggtgttcatggcgcacaactcggga
gtgatgaccctgggcttcaccatggtcatcctctgggggctgctgcgcggccaggaagaa
cgtcactga
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