Herbaspirillum rubrisubalbicans: Hrubri_3538
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Entry
Hrubri_3538 CDS
T04238
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03030
DNA replication
hrb03430
Mismatch repair
hrb03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Hrubri_3538 (dnaE)
03430 Mismatch repair
Hrubri_3538 (dnaE)
03440 Homologous recombination
Hrubri_3538 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hrb03032
]
Hrubri_3538 (dnaE)
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_3538 (dnaE)
Enzymes [BR:
hrb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Hrubri_3538 (dnaE)
DNA replication proteins [BR:
hrb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Hrubri_3538 (dnaE)
DNA repair and recombination proteins [BR:
hrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Hrubri_3538 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
HROB
Motif
Other DBs
NCBI-ProteinID:
ALU90695
LinkDB
All DBs
Position
complement(4156430..4159888)
Genome browser
AA seq
1152 aa
AA seq
DB search
MTTPQFVHLRMHSEYSIVDGLVRIDDIVKAAAKDGQAALAVTDLANLFCMVRFYKEARGK
GVKPIAGCDLWITNDADREKPFRLLVLIKNRHGYLQLCEVLSQAWLNNQYKGRAEVRMEW
LEALRHQEGGNGLIALSGAAMGDIGQAIDNGNLTQAEACARRWAEIFPGAFYLELQRAGQ
ANMELQVRQSVALGAKLGLPCVATHPIQFQSPEEFIAHEARTCIAEGEIMANARRVRRFN
EQQYFKSQAEMAELFADLPGALANSVEIAKRCNLVLQLGKPQLPDFPTPDGMSIDDFLVA
QTKAGLEVRLKELFPNEAEREKQRPRYEARLEFENNTIIKMKFPGYFLIVADFIQWAKNN
GVPVGPGRGSGAGSLVAYCLLITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQEGRDRV
IQYVKDRYGKDAVSQIATFGTMAAKGAVRDVGRVLDLGYNFCDGISKLIPFKPGKLVTLA
DAIEEEPLLKERLENEEEVKQLMGLAQQVEGIARNIGMHAGGVLIAPGKLTDFCPLYTQG
GDSGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDRAVRYIRMLDPAMADFDLAKLPLDDR
PSYELLTKAKTVAVFQLESRGMQGMLKDARPDRFEDIIALVALYRPGPMDLIPDFCKRKH
GEAFDYPDPRTEGILSETYGIMVYQEQVMQMAQVIGGYSLGGADLLRRAMGKKKAEEMAK
HRELFREGAAKNGLDQAKADEIFDLMEKFAGYGFNKSHAAAYALLSYYTAYLKAHHPAAF
MAANLSLAMEDTDKVKILIEDSIDICKLAILPPDINKSDYRFMPVGEPGKKATQIRYGLG
AVKGAGQNAIEAILEARKSGPFKDLFDFAKRVDKKQINRRTIDSLIRAGAFDCFKVDRAI
LQASVNLAWESAEQAEKSANQVSLFGGDDSDLEAPLEYVQVPPWSDKQRLTEEKGALGFY
LSGHLFSAYEKEVRRFVRTKIASLEPSWEPRSLAGIITGVRVQMTQRGKLVICTLDDGTG
VIEATIYNELFEPFKHLIKEDELLVVSGKVSEDRFNGGLRVAADKVMDLGAARIQYGVRM
VVSINKAIDPNHLRDTLSAHRQEQGLPFVMRYQQADAACEVVLGDAWRINPSDSLQSTLV
ASFGKEAVVVEY
NT seq
3459 nt
NT seq
+upstream
nt +downstream
nt
atgactaccccgcaatttgtacacctccgtatgcactcggagtactccatcgtggacggc
ctggtgcgtatcgacgacatcgtcaaggccgccgccaaggatggacaggccgccctggcg
gtgaccgacctcgccaacctgttctgcatggtgcgtttctacaaggaagcgcgcggcaag
ggcgtcaagcccatcgctggctgcgacctgtggatcaccaacgatgccgaccgcgaaaag
cccttccgcctgctggtgctgatcaagaaccgtcacggttacctgcagttatgtgaagta
ttgtcccaagcctggctcaacaaccagtacaagggccgcgccgaagtgcgcatggaatgg
ctggaggcgctgcgccaccaagagggtggcaacggcttgatcgctctgtcaggggccgcc
atgggcgatatcggccaggccatcgacaatggcaacctgacccaggccgaagcctgcgcg
cgtcgctgggcggaaatcttccccggcgccttctatctggagctgcaacgcgccggccag
gccaatatggagctgcaggtgcgccagagcgtcgccttgggcgccaagctgggcctgccc
tgcgtggccacgcacccgatccagttccagagcccggaagaattcatcgcccacgaagcc
cgcacctgcatcgccgaaggcgagatcatggccaatgcgcgccgggtgcgccgcttcaac
gagcagcaatacttcaagtcgcaggccgagatggccgagctcttcgccgatctgcccggc
gcgttggccaattcggttgaaatcgccaagcgctgcaacctggtgctgcaactgggcaag
ccgcaactgccggacttccccacgccggatggcatgagcatcgacgatttcctggtagcc
cagaccaaggccgggctggaagtgcgtctgaaggaactgtttcccaacgaagccgagcgc
gaaaagcagcgcccgcgctatgaagcgcggctggagttcgagaacaacaccatcatcaag
atgaagttcccgggctacttcctgatcgtggccgacttcatccagtgggccaagaacaat
ggcgtgccggtcggtcccggtcggggttccggtgccggctcgctggtggcgtattgcctg
ttgatcaccgacctggacccgctgcgctacaacctgctgttcgaacgtttcctgaacccg
gaacgcgtctcgatgcccgacttcgacatcgacttctgccaggaaggccgcgaccgcgtg
atccagtatgtgaaggatcgttacggcaaggatgcggtctcgcagatcgccaccttcggt
accatggcggccaagggcgcggtgcgcgacgtgggccgcgtgctggacctgggctataac
ttctgcgacggcatctccaagctgattcccttcaaacccggcaagctggtcacgctggcc
gacgccatcgaggaagagccgctgttgaaggagcgcctggaaaacgaagaagaggtcaaa
caactgatgggcctggcccagcaggtcgaaggcatcgcccgcaacatcgggatgcacgcc
ggtggcgtgctgatcgcgcccggcaagctgaccgatttctgcccgctctacacccagggc
ggcgactccggcgtagtttcgcaatacgacaaggatgacgtggaagcggtcggtttggtg
aagttcgacttcttgggcttgaccacgctgaccatcctcgaccgtgcggtgcgctacatc
cgtatgctcgacccggccatggccgacttcgacctggccaagctgccgctggatgaccgg
ccgtcctatgaactgctgaccaaggccaagacggtcgccgtattccagctggaaagccgt
ggtatgcaaggcatgttgaaggatgcccggcccgaccgtttcgaagacatcatcgcgctg
gtggcgctgtatcgtcccggcccgatggacctgatccccgacttctgcaagcgcaagcac
ggcgaagccttcgactatcctgacccacgcaccgagggcatcctctccgagacctacggc
atcatggtctatcaggagcaggtgatgcagatggcgcaggtcatcggcggctactcgttg
ggcggcgccgacttgctgcgtcgggccatgggcaagaagaaggccgaggaaatggccaag
caccgtgaactgttccgcgaaggcgcggccaagaacgggttggaccaggccaaggccgac
gagatcttcgacttgatggaaaagttcgccggctacggcttcaacaagtcgcacgcggcc
gcctatgcgttgctgtcctattacaccgcctatctgaaggcccatcaccccgccgcgttc
atggccgccaacttgtcgctggccatggaagacacggacaaggtgaagattctgatcgaa
gactcgatcgatatctgcaagctagccatcctgccgccggacatcaacaagtccgactac
cgctttatgccggtgggcgagccgggcaagaaggccacccagatccgctatggcctgggg
gccgtcaagggcgccgggcagaacgccatcgaagccatcctggaggcgcgcaagagcggt
cccttcaaggacttgttcgacttcgccaagcgggtggacaagaagcagatcaaccgccgc
accatcgattcgctgatccgtgccggtgccttcgattgcttcaaggtcgaccgcgccatc
ctgcaggcctcggtcaacctggcctgggaaagcgccgagcaggccgagaaatcggccaat
caggtcagcctcttcggtggcgacgacagcgacttggaggcgccgctggaatacgtgcag
gtgccgccctggagcgacaagcagcgcctgaccgaagagaagggcgcgctgggcttctat
ctctccggccatctgttctcggcctacgaaaaggaagtgcgccgcttcgtgcgcaccaag
atcgccagcctggaaccctcgtgggagccgcgcagcctggccggcatcatcaccggggtg
cgggtgcagatgacccagcgcggcaagctggtgatctgcacgctcgatgatggcacgggc
gtgatcgaagccacgatctataacgaactgttcgagcccttcaagcatctcatcaaggaa
gatgaattgctggtggtttcgggcaaggtgtcggaagatcgcttcaatggtggcttgcga
gtggctgccgacaaggtcatggacttgggcgcggcgcgcatccagtatggcgtgcggatg
gtggtctcgatcaataaggcgatcgaccccaaccacctgcgcgatacgttgtcggcacat
cgtcaggaacagggtttacccttcgtgatgcgctaccagcaggccgatgctgcctgcgag
gtagtgctgggcgacgcctggcggatcaatcccagtgatagcctgcaatcgacgctggtg
gcgtctttcgggaaggaggcagtggtggtcgagtattga
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