Herbaspirillum rubrisubalbicans: Hrubri_3590
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Entry
Hrubri_3590 CDS
T04238
Name
(GenBank) Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein
Organism
hrb
Herbaspirillum rubrisubalbicans
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Ortholog
Paralog
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_3
PAS_9
PAS_4
PAS
PAS_8
GGDEF_GdpP
Motif
Other DBs
NCBI-ProteinID:
ALU90747
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Position
complement(4226657..4228765)
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AA seq
702 aa
AA seq
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MTALVRPPRLLETLLANLDGMVYRCRDDAHWTLEFVSDGCQALTGYTPADLLLNSRISFL
QLTHPEDRAMVRKHIDACMRERRRIDIEYRIVHADGSLRWVWERGVGLYNAAGKVEAMEG
FLQDVTERKEAAHALQEAERRYRSIFENAIEGVFQTTPDGTYIAVNPALARIYGYHSPED
LIVGLRDITHQLYVEPERRAEFMRLMEREGSVSNFESRVYRRDGDIIWISENARAVYDDS
GKLVCYEGTVEAITERKLYEAEMRHQATHDALTGLPNRNMLHEHLQRAIQVARQKGGLTA
VVFVDLDQFKFINDSLGHQVGDELLKAVAQRLQACLRDTDMVARQGGDEFVLVLQNQTGG
ELGIAEVMQRILAAVARPWQTGDRELQITASIGVSRYPADGKDVETLLKQADSAMYRAKE
QGRNNFQFFAPWMDTQVSNRLEMLINLRRALDHDEFKLYYQPKLSLKDGRVIGAEALIRW
QSPEQGMVPPDRFIPFAEEAGLIVPIGEWVLRTACHQNKRWQQAGLPPIPVAVNLSPRQL
NQSLPDFVSGVLAQSGLDAACLELEITENVVMKDAEKSVATLHALKRLGLQISVDDFGTG
YSSLSYLRRFPVDALKIDKSFVRDIARDADSAAIVKAVISLAHILNLRVIAEGVEDEQQH
AFLKENACDEVQGYYFGKPMAVEDFTAWMSRQGPTAQVLSCK
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgacggccctggtgcgtccgccgcgcctgctggaaaccttgctggccaacctcgatggc
atggtctatcgctgccgcgacgacgcccactggaccctggaattcgtcagtgatggctgc
caggccctgaccggttacacgcccgcggatttgttgctcaatagccgcatctccttcctc
cagctgacccacccggaagaccgtgccatggtgcgcaagcatatcgatgcctgtatgcgc
gagcgccgtcgcatcgacatcgaataccgcatcgtgcacgccgatggcagcctgcgctgg
gtgtgggagcgcggggtggggctctacaacgcagccggcaaggtggaagccatggagggc
tttctgcaggacgtgaccgagcgcaaggaagccgcgcacgccttgcaggaagccgagcgc
cggtatcgcagcatcttcgagaatgccatcgagggtgtgttccagaccacccccgatggc
acctatattgccgtcaacccggcactggcgcgcatctatggctatcactcgccggaggat
ctgatcgtgggcctgcgcgacatcacccaccagctctacgtggagcccgagcgccgggcc
gaattcatgcgcctgatggagcgggagggatcggtctccaatttcgagtcgcgcgtgtac
cggcgcgatggcgacatcatctggatttccgaaaacgcccgcgccgtctatgacgacagc
ggcaagctggtttgctacgaaggcacggtggaagccatcaccgagcgcaagctgtacgaa
gctgaaatgcgccaccaggccacccacgatgccctgaccgggttacccaatcgcaacatg
ctgcacgaacatctgcagcgcgccatccaggtggcgcgccagaagggtgggttgacggcg
gtggtgttcgtggacctggaccagttcaagttcatcaacgacagcctgggccaccaggtc
ggcgatgagttgctcaaggcggtggcccagcgcttgcaggcctgcctgcgcgatactgac
atggtggcacgccagggcggggatgagttcgtgctggtattgcagaaccagaccgggggc
gagctgggcatcgccgaggtgatgcagcgcatcctggcggcggtggcacggccctggcag
actggcgaccgcgaactccagatcaccgccagcattggcgtgagtcgctatccggctgat
ggcaaagatgtggaaaccctgttgaagcaagccgactccgccatgtaccgggccaaggag
caggggcgcaacaacttccagttctttgctccttggatggatacccaggtcagcaaccgc
ctggaaatgctgatcaacctgcgccgcgcgctggaccacgacgaattcaagctgtattac
cagcccaagctgagcctcaaggatggacgcgtcatcggcgccgaagccttgatccgctgg
cagtcgccggagcagggcatggtgccgccggaccgcttcattccctttgccgaagaggcc
gggttgatcgtgcccattggcgaatgggtgctgcgtaccgcctgccaccagaacaagcgt
tggcagcaagccggcttgccgcccattccggtggcggtcaacctgtcgccgcggcaattg
aaccagagcctgcccgacttcgtctccggggtgctggcgcaaagcggcttggatgccgcc
tgcctggagctggaaatcaccgaaaacgtggtcatgaaggatgccgaaaagagcgtggcc
accttgcacgccttgaagcgtctgggtttgcagatttcggtggatgactttggcaccggc
tactccagtctgtcctacctgcggcgcttcccggtggatgcgctgaagatcgacaagtcc
ttcgtgcgcgacattgcgcgcgatgccgatagtgcggccatcgtcaaggccgtcatttcg
ctggcccatatcctgaacctgcgcgtcattgccgagggcgtcgaggatgagcagcaacat
gctttcctgaaggaaaatgcctgcgatgaagtacagggttattactttggcaagcccatg
gccgtcgaggatttcactgcctggatgagtcgtcaggggccaactgctcaggtactgtca
tgcaaataa
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