Herbaspirillum rubrisubalbicans: Hrubri_3607
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Entry
Hrubri_3607 CDS
T04238
Symbol
sbcB
Name
(GenBank) Exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Hrubri_3607 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrb03400
]
Hrubri_3607 (sbcB)
Enzymes [BR:
hrb01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
Hrubri_3607 (sbcB)
DNA repair and recombination proteins [BR:
hrb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Hrubri_3607 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
Hrubri_3607 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Hrubri_3607 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
DosC_2nd
Motif
Other DBs
NCBI-ProteinID:
ALU90764
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All DBs
Position
4246697..4248133
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AA seq
478 aa
AA seq
DB search
MSNHTFLWHDYETFGAVPRRDRPAQFAAVRTDAELNEIGEAIMIYCKPAPDYLPDPISCL
ITGITPQHCLQHGLPEHEFAARIEQTLGEPGTIGVGYNTIRFDDEVTRFMFWRNLIDPYA
REWANGCGRWDLLDVVRLTYALRPQGITWPKKEDGSVSFKLEDLSKANGLVHEAAHDALS
DVRATIALARLIRQNNPRLFDFALALHKKDKAAAEIGLPVAKPFLHVSGMFPVANGCLAL
MWPLGMHPTNKNEVIAWDLGYDPSELAGLDAAAVRQRMFTKRDELPEGMTRLPIKSIHLN
KSPMVVGNLKTLTTERAAELNIDVQAALRHADLAAALPDLAPLWRQVYQRDSEAAADVDE
DLYGGFIGNGDRRQLTQLRALPPQALATASVAFDDMRLNEVLFRYRARNFPQTLSPDEAQ
HWEEHRAARLFEGAGGARTIAQLFEQIDQLQEESDDERTQDILGALYDYAEMIAPAHQ
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcacaccttcctctggcacgactacgaaacctttggcgcagtgccgcgccgc
gaccgtcccgcgcagttcgctgccgtgcgcaccgatgccgagctcaacgagatcggcgaa
gccatcatgatctattgcaagccggccccggactacctgcccgacccgatatcctgcctg
atcaccggcatcaccccgcagcattgcctgcaacacggcctgcccgagcatgagttcgcc
gcccgcatcgaacagacactgggcgagcccggcaccattggcgtgggctataacaccatc
cgcttcgacgatgaagtcacgcgcttcatgttctggcgcaacctgatcgacccgtatgcc
cgcgaatgggccaatggctgcggccgctgggatttgctggacgtggtgcggctgacctac
gcactgcgcccgcagggcatcacctggccgaagaaggaagacggcagcgtcagcttcaag
ctggaagacctctccaaagccaatggcctggtccacgaagcggcccacgatgcgctctcg
gatgtgcgcgccaccattgcactggcgcgcctgatccgccagaacaacccgcgcctgttc
gacttcgccctggccctgcacaagaaggataaggccgccgccgagatcggcctgcctgtg
gccaagcccttcctgcatgtctcgggcatgttcccggtggccaatggctgcctggcgctg
atgtggccgctggggatgcatccgaccaacaagaacgaagtgatcgcctgggatctcggc
tacgaccccagcgaactggccggcctggatgcggccgcggtgcgccaacgcatgttcacc
aagcgtgatgaactgcccgaaggcatgacccgcctgccgatcaagagcatccacctcaac
aagtcaccgatggtggtgggcaacctcaagaccctcactaccgagcgcgccgccgagctc
aatatcgacgtccaagccgccctgcgtcacgccgacctggccgccgccctgcccgacctg
gcgccgttgtggcgccaggtctaccagcgcgacagtgaggcggctgcagacgtagatgaa
gatttgtacggcggcttcatcggcaatggcgaccgccgccagttgacgcaactgcgcgcc
ctgccaccgcaggcgctggccaccgccagcgtggccttcgacgacatgcgactaaatgaa
gttttgttccgctatcgcgcacgcaacttcccccagaccttgagccccgacgaagcccag
cactgggaagaacaccgcgccgcccgactgttcgaaggggccggcggtgcgcgcaccatc
gcgcaactgttcgagcagatcgaccagttacaggaagagtccgatgacgaacgcacccag
gacatcctgggtgcgctgtatgactatgcggaaatgattgcgccagcccatcagtga
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