KEGG   Herbaspirillum rubrisubalbicans: Hrubri_4040
Entry
Hrubri_4040       CDS       T04238                                 
Name
(GenBank) conserved hypothetical DNA binding protein
  KO
K18831  HTH-type transcriptional regulator / antitoxin HigA
Organism
hrb  Herbaspirillum rubrisubalbicans
Brite
KEGG Orthology (KO) [BR:hrb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:hrb03000]
    Hrubri_4040
  09183 Protein families: signaling and cellular processes
   02048 Prokaryotic defense system [BR:hrb02048]
    Hrubri_4040
Transcription factors [BR:hrb03000]
 Prokaryotic type
  Helix-turn-helix
   Other families
    Hrubri_4040
Prokaryotic defense system [BR:hrb02048]
 Toxin-antitoxin system (TA system)
  Type II TA system
   HigB-HigA
    Hrubri_4040
SSDB
Motif
Pfam: HTH_3 Peptidase_M78 HTH_31 Sigma70_r4 HTH_37 HTH_26 HTH_23 YdaS_toxin HTH_28 Peptidase_U49 HTH_29
Other DBs
NCBI-ProteinID: ALU91189
LinkDB
Position
complement(4748885..4750015)
AA seq 376 aa
MIETDLSAPFAPDWILPPGQSVLDLAEERGWTQSELAQRLGYTEKHVSQLINGKVALTVD
AAQRLERVLGSSMDFWLTLEANFQKHLARLEAAERHAAWVSWLDELPLKELMGCGAIAKQ
RVDGKHKPDLVEACLRFFGVATPDEWRAHYGGMQMAFRRTRSEQSDVGAISAWLRLGEQQ
VEKLDGPKYDRARFEKSLEAIRGLTQLAPEVFEPKLRSLLHEAGVSLVLVPAITRSHVSG
VARWLSPTRPLIQLSLYGKSNDKFWFSFFHEAAHILLHANSREEKKSIFLDDPNAADTKN
PQEREADAWAGNWLIPAEFVKTLPRLKTKVEVKEFASLIGVHPGIVVGRLQHDGLIAPSW
MNELKQSLRFEESSGH
NT seq 1131 nt   +upstreamnt  +downstreamnt
atgattgagactgatctgagtgctccttttgcgccagactggatcttgccgcctggtcaa
tccgttctcgatctggctgaggagcgtggttggacgcaatccgagttggcccaacgtctc
ggctacaccgaaaagcatgtcagccagcttatcaacggcaaggtggcgctcactgttgat
gcagcccagcgtctcgaacgggtcctgggaagcagcatggatttctggctgacgctggag
gcgaattttcagaagcatctggcacgtctggaagcagccgagcgtcatgcagcttgggtg
tcctggctcgatgaattgccgctcaaggaactgatgggctgtggcgccatcgcgaagcaa
cgggtcgatggcaagcataaaccggacttggtggaggcttgtttgcgtttctttggtgtg
gccacccccgatgaatggcgcgctcattatggcggaatgcagatggcgtttcgtcgcacc
cggtccgagcagagcgacgtcggtgcgatttcggcctggcttcgattgggtgagcaacag
gtagaaaagctcgatggccccaaatatgacagggcgcgtttcgagaaatcgttggaggcc
attcgcgggttgacgcagcttgctcccgaggtgttcgaaccgaagttgcgcagcttgttg
catgaagccggggtgtcgctggtgttggtgcctgccattacgcgttctcatgtcagtgga
gtggcgcggtggttgagtccgacgcgtccgttgatccagttgtcgctatacggcaagagc
aatgacaaattctggttcagctttttccatgaggctgcgcatatcttgttgcacgccaat
agccgggaagagaaaaaatcgatctttctggatgatcccaatgcggcagatacgaaaaat
ccgcaggagcgggaagccgatgcttgggctggaaactggttgattcctgctgagttcgtg
aagaccttgccgcgtctgaagaccaaggttgaggtcaaggagttcgcaagcttgattggt
gtgcatccaggaatcgtggtggggcgtttgcagcatgatggcttgattgcgccctcatgg
atgaatgagttgaagcagagcttgcgtttcgaggaaagctcggggcactga

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