Herbaspirillum rubrisubalbicans: Hrubri_4139
Help
Entry
Hrubri_4139 CDS
T04238
Name
(GenBank) type I polyketide synthase
Organism
hrb
Herbaspirillum rubrisubalbicans
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ketoacyl-synt
Acyl_transf_1
KR
Ketoacyl-synt_C
ADH_zinc_N
ADH_zinc_N_2
PKS_DH_N
PS-DH
adh_short
PP-binding
KAsynt_C_assoc
adh_short_C2
ADH_N
CurL-like_PKS_C
Methyltransf_12
Methyltransf_23
DUF7080
RhiE-like_linker
Methyltransf_11
Methyltransf_31
Thiolase_N
ACP_syn_III
Polysacc_synt_2
Ubie_methyltran
Motif
Other DBs
NCBI-ProteinID:
ALU91286
LinkDB
All DBs
Position
4850592..4858205
Genome browser
AA seq
2537 aa
AA seq
DB search
MIPAENDTQHIPRDAAPTQPTGKDQERQAIAIIGLAFRFPGDLADEDSLWSALSEGRDMV
THLPAERFATDELAHPERPEAGRSVNFSAGVLSGIDQFDAAFFGISPREAAWLDPQQRLL
LELSWEAMENAGKPPSSLAGTDCAVYVGISSLDYGTRGLDDLASLSAHTMTGNTLSLAAN
RLSYFFDLRGPSLAVDTACSSSLFALHHACRCLQHGEAKVALVGGVNLLLHPYPFVGFTK
ASMLSADGRCKVFDAAGNGYVRAEGGAVLLLKPLRQAQRDGDCIHAVILASGINSDGKRK
TGITIPSQAGQAELMRSVLKQSGLRGADIDFIEAHGTGTMVGDPVEAAAIGEVYGGQRAA
PLPIGSIKANLGHLEAASGMASLVKTVLALKRRALPPQIQLHEPHPSIDLEALNLRCHTS
PFPLSKEGPLLAGVNSFGFGGANAHVLLREYHADVSTDCRTTPASHPPLFLSAANEAALR
ALAGRYQRLLDKHTAGLDFYDLAWSAAYRRNRLPSRLALYCEDGKNAATALAAFAQGQPH
EAIVQEQGLPQKGRVAFVYTGNGAQWTGMALRLMHESSRFAVSMADLDARMAAVAGFSIL
EQLQADAHSSRLDDTEVAQPLIFAIQVALTQWLAAQHVIPDVVCGHSVGEVAAAWACGML
DMDAAIRLIVARSRAQGMTRGSGRMAAVGLSVTALEQLLGEMVEPLDLEIAAINSADNLT
VSGRLADLERLQARLNERNQFFRLLDLDYAFHSRYMEPAREALLTQLGDWTSGTATRAMF
ISTVSGTRSLGPELDAHYWWRNVREPVRLSDAVSEMARQGCHILVEIGPHAILQRYLRDC
LQSNDIKGRILPTLRRHADGITALTDTVLRIQLLAEQPDLSAHFPMPGRPVNLPNYPWQR
ESFWHPSTNESGRAITSRRTHPLLGWSLPRSSHCWENVVDPCTLPWLADHRVGGAIVFPG
AAYLEMALAAASQWSPGQCLSCEQIDILAPMVFDGNHARTLRFELDEHDGSFQIKSRPRL
SEEDWILHCAGRILRSALHPKPVCSDLPRQASLQIDAQKHYRHSQALGLDYGPSFHSLQE
VHLHASRLEGQLLVPEELDITAYLIHPVLLDGCYQALLNLVTSDASDKMQMAFLPIKTGG
LHYRRAGKPHHFRIEVRRHTLRSLVADIDLFDPQGHLLASLYGCRFRAAPVQSKVAPAPD
CWQMVARLLPHPLDERVSQLPDSQEMLAQLSRSLKPHVSQQTHWQEESLPLLKAAIVAWS
HHALLRISRQGESHLQNLLASADAYVQWVAGILQSENLLSQVKGEWQLSPDSNLPPAEDI
WNLLLREPDMPTSLLLAVGRIGPRLAELLLAPALRTELLEEFGLSPMGANGDQLDPVGRL
MHSALTTLLQSMAGGLSRSRRLRVLEIGARANLPSPNWLRQFPEHQVVLTYAYPDAGAEN
PGGTSAASLGCKVIDFDCQEWTFKGAIDGLPGSFDIIVVHHVLHQARQRETALQQLRKLL
IPGGRLLVAERHADWAADLTNGLQPRWWRNTRDGGPSLSSLLAPAHWMSALTWAGFKDIH
QISSPDPSACREGSYLLLAQRPDSESTSCAAVAAASWLLLVDPTSHDFAQSLAKRLERQG
QQLTLHNITLAAGAEAYRAADHVLFLCGWSTPPEDTAALCSTALQVVQALGTAAVGGTRL
WFITRDGALVSDQRAPASAGNPAQCALWGLGRVVMNEYPKLASKLIDLAGWQNEPSELQL
QRLENELLHPDRLEEIILTDNARQIPLWQAHTPPAAIPASPNRVRLDFNLPGQLRNLAWR
PNPTTDMGPEEVEVAVQATGLNFRDIMYLMGLLPDEAVEAGFGGASLGLEFSGVVSRVGR
SVTAFEPGDKVIGFGSACFASHVVTRCEALALMPGQWSFEAAATVPTVFFTTYYALKELA
NLQPGERVLIHGAAGGIGLAAIQLAKLLGAEIFATAGSEEKRDFVRLLGVDHVFDSRNLD
YVERIMEHTSGQGVDVILNSLAGEAIRRNLSVLKPFGRFLELGKRDFFENTRIGLRPFKD
NISYFGIDADQLLTRRPDLAARLLKEVMALFQDGHLFPLPYRAFPAERVEEAFRFMQQAK
HIGKVVVSLAAAPTLQLEHTEPAGTTLTSSGTWLITGGLSGFGLETARWLARNGVRSLVL
VGRRGWATPAAKEAVDTLSALGADVHVRACDISDKAAVTAMIEQLHDLAAPIRGVVHAAA
VFDDGLLVDLDAARMAAVIQPKLLGAWNLHQATLKLALDHFLLYSSLSCAIGNPGQGNYV
AANAALEGLAAMRRHLGLPVTCIAWGPIADTGYLARNPSVHRTLEQRLGSILLDSQHALR
QLERLSVCTPSLIVADLDWPRLSTQLPGATAERFALFKQSSHAPARPDRADELQHILRTR
STEDIHRLIEDRVTQELSRILAIAPERIGLDTALHELGLDSLMAVELALSIEQGLQLRLP
AMLLNDAPTARKIIRRLVAQLQAPRSPAETDEAATGVMERVIDELSNQHGEILSQQELQD
IAQEARAMSPTNFRTTR
NT seq
7614 nt
NT seq
+upstream
nt +downstream
nt
atgattccggccgaaaacgacacccagcatattccccgcgatgcagcacctacgcagccc
acagggaaagaccaagaacgacaggcaatagcaatcatcggcctggcatttcgctttccc
ggcgatctggccgacgaagatagcctgtggtccgccttgagcgagggacgggatatggtg
acgcacctacccgccgagcgctttgcaacggatgaactggcacaccctgagcgtcccgag
gctggccgcagtgtgaacttctctgccggggtactctcgggcatcgatcaattcgatgcg
gcattctttggtatctcgccacgcgaggcggcttggctcgatccccagcagcgcctgctg
ctagagctctcctgggaagccatggaaaatgccggcaagccaccgtccagcctggctgga
accgactgcgctgtctatgttggcatctccagcctggactatggcacgcgaggcctggat
gacctggcctcgttgtcggcccatacgatgacgggcaataccctcagtctggcggccaac
cgactgtcctatttctttgacctgcgtggcccatcgttggcagtcgataccgcctgttcg
tcttcactgttcgccctgcatcacgcctgccgctgcttgcagcatggcgaggccaaggtc
gccctggtcggcggtgtcaatctgctgctgcatccctatcctttcgtcggcttcaccaag
gcatcgatgttgtccgctgacggtcgctgcaaggttttcgatgccgcgggaaacggctac
gtgcgcgccgaaggcggcgcggtattgctgctcaagccgctgcgtcaggcgcagcgcgac
ggtgactgcatccacgccgtgatcctggcaagcggtatcaattcagatggcaagcgcaag
accggcatcaccatcccgagccaagcaggacaagcagagctgatgcgatcggtattaaag
caaagtggcttgcgcggcgcggacatcgacttcattgaggcacatggcaccggcaccatg
gtcggcgatcccgtcgaagctgccgccatcggcgaagtctacggtggccagcgggcggct
cctctgcccatcggttcgatcaaggccaacctggggcatctggaggcagcctccggcatg
gcgagtctggtcaagaccgtactggcactcaaacgacgtgccttgccaccgcagatccaa
ttgcacgagccgcatccaagcatcgatctggaggcgttgaatctgcgctgccataccagc
cctttcccgctgtccaaggaagggccattgttggcaggcgtcaattctttcggcttcggt
ggagcaaacgcacatgtcctgttgcgtgaatatcacgcagacgtgtctacggattgccgc
acgactcccgcatcacatccccccttgttcttgagcgccgccaatgaagccgccttgcgc
gccttggcaggacgctaccagcgtctactggacaagcatactgccgggctggacttctac
gatctggcctggagcgcagcctatcggcgcaaccgcctgccatcccgactggcgctgtat
tgcgaggatgggaagaatgcggccacagcactggcggcgtttgcacagggtcagccgcat
gaggcgatagtgcaagaacaaggtctgccgcagaaaggcagagtcgccttcgtctatacc
ggcaacggcgcccaatggacaggaatggcactgcgcctgatgcacgagtcctcccgattc
gccgtatccatggccgatctcgatgcccggatggcagccgtcgccggattttccatactg
gagcaattacaggctgacgcgcactcgtcacgcctggacgataccgaagtcgcacagcca
ttgatcttcgccatccaggtggcgctcacgcagtggctggccgcgcagcacgtcatcccc
gatgtggtatgcggtcacagcgtcggcgaggtagccgcggcctgggcctgcgggatgctc
gatatggatgcggcgattcgcctcatcgtcgcgcgtagccgagcccagggcatgacacgt
ggcagcggtcggatggcagcggttggtttgtcagtcactgcgttggagcaactgctggga
gagatggtggagccgcttgacctggaaattgcagcaatcaacagcgctgacaatctgacg
gtctctggccggctcgccgatctggaacgtctacaagcacgtctaaacgagcgcaatcaa
ttcttccgcctgctagacctggactatgccttccacagtcgatacatggagcccgcacgc
gaggcgttgttgactcagcttggcgactggacatcaggtactgccacgcgagccatgttc
atttccacagtcagcggcacgcgcagccttggccctgaactggatgcccattactggtgg
cgcaacgtgcgcgagccggtacgtttgagcgacgctgtgagcgaaatggcccggcaaggc
tgccacatcttggtcgaaatcggcccccatgccatcctgcagcgctatctgcgcgactgc
ctccaaagtaacgacatcaagggcaggatattgcctaccctgcgccgtcatgcggacggc
atcacggcactcaccgacaccgtattgcgcatacagttgctcgccgagcagcccgacctc
tctgcccactttccaatgccgggccggcccgtgaatctgcccaactatccgtggcagcgc
gagtcattctggcatccaagcaccaatgaatctgggcgtgcgatcacgtcccggcgtacc
caccccttgctgggctggtccctgccgcgtagtagccattgctgggaaaacgtagtcgat
ccctgtaccttgccctggctggccgaccaccgcgtcggcggcgccatcgtctttcctggt
gcggcctacctggaaatggcgctggccgccgccagccaatggtcacccggccaatgcctg
agctgcgagcagatcgacatcctcgcgccgatggtcttcgacggcaaccacgcgcgcacg
cttcgcttcgaactggacgaacacgatggcagcttccagataaaaagccgacctcggctg
agcgaagaggactggatattgcactgcgcaggccgcatcctgcgcagtgccctccatccg
aaaccagtctgttctgacctgccacgacaggcaagcctgcagatcgatgcacagaaacat
tatcgtcatagccaggcattgggcctcgactacggccccagcttccatagcctgcaggaa
gtccacttgcacgcctcccgactggaaggccaattattggtgccggaagaactggacatt
acggcctatttgatccacccggtgctgctggatggatgctatcaggccttgctgaacctg
gtcacaagtgacgcgtcggacaagatgcagatggccttcctccccatcaagactggtggc
ttacattaccgccgcgctggcaagccgcatcacttccgtatcgaagtccggcgtcatacc
ttgcgctcgctcgtggccgacatcgatctgttcgatccgcaaggccatttactagccagt
ctttatggctgccgcttccgtgccgcaccagtgcaatccaaagtagcaccagctcccgac
tgctggcagatggtggcccggttgctgccacacccgctggatgagcgcgtcagccaattg
cctgacagccaggaaatgctggcgcaattgagccgctccttgaaaccgcatgtatcgcag
cagacacactggcaggaagaaagtctgcctctgctgaaggcggccattgtggcctggagt
caccatgcattgctccgtatctctcgacagggtgaaagtcatttgcagaacttgctggca
agtgcagatgcctacgtgcagtgggtagccgggatactgcaatccgaaaacctgctcagt
caggtcaaaggagaatggcaactcagtccggacagcaatctccctcctgccgaagacatc
tggaaccttcttctgcgcgagccggacatgcccacatcgctgttgctggcggtaggcaga
atcggaccacggctggcggagttgctgcttgccccggcacttcgcacagaactgctcgaa
gagtttggcctttcaccgatgggcgcaaacggcgaccaacttgatcctgtcggccgtctt
atgcattcggcgttgactacgctattgcaaagcatggcaggaggcttgtcacgatcgcga
cgcctgcgtgtcctggagattggtgcccgagccaatctcccgtcgccgaactggctacgc
caattccctgaacaccaggtcgttctcacctacgcctaccccgatgctggcgcagaaaac
ccaggcggcaccagtgcagcaagcctcggctgcaaggtcatcgacttcgactgccaggaa
tggacgttcaagggtgctattgacggtctccctggcagcttcgacatcattgtcgtgcat
cacgtcctgcatcaggctcgccagcgggaaaccgcgctgcaacagctaagaaagttgctc
atccccggcgggcgtttgctggtcgctgagcgacacgcggactgggctgccgatctcacc
aacggcttacaaccacggtggtggcgcaatacacgtgacggcgggccttccctctcatcc
ttgctagcacctgcgcattggatgagcgcattgacatgggccgggttcaaggatatccat
cagatatccagccccgatccatccgcatgtcgcgaaggctcttatctgctgctggcccag
cgcccagacagcgaatccacttcgtgcgcagcagtagctgcggcatcctggctactactc
gtcgacccaacatcgcacgatttcgctcagtcccttgccaagcgccttgaacggcaaggt
caacagcttactctgcacaatatcaccctcgctgcaggggcggaggcctatcgcgcggcc
gatcatgtacttttcctttgtggatggtcgaccccacctgaagatacggccgccctatgt
agcaccgctttgcaagtggtacaggcactgggtactgctgctgtgggtggcacgcgcctc
tggttcatcacgcgtgatggtgcgttggtgtcggaccaacgcgcaccagcatctgctggc
aatccagcacagtgcgccttgtggggcctgggacgggtagtcatgaacgaatatccgaag
ctggccagcaagctgatcgatcttgccggatggcagaacgaaccgagtgagctccagcta
caacggctggaaaacgagcttctgcacccggatcggctggaagaaatcatcctcacagac
aatgcgcgtcagatacccttgtggcaagcgcatacgccgcccgctgcgataccggcctca
cccaatcgagtccgactcgatttcaatctgccaggacaactgcgcaaccttgcctggcgg
ccgaatcccacaaccgatatgggaccggaggaggtggaagtcgccgtccaggcaactggg
ctgaattttcgcgacatcatgtatctgatgggtctgctgccggatgaagcagtggaagcc
ggctttggcggcgccagccttgggttggaattttccggcgtcgtcagccgcgtaggccgc
tcggtgacggcctttgagccaggtgacaaggtcatcggctttggttcggcttgctttgcc
agccatgtcgtgacccgctgcgaagcactggcactcatgcctggccagtggtccttcgag
gccgccgccaccgttcctacagtcttcttcactacctactatgccctgaaagaattggcc
aatctgcagcccggtgaacgggtgctgatccatggagcagccggcggtatcggcttggcg
gccatacaactggccaaactattgggtgcggaaatcttcgcaaccgctggcagtgaagaa
aaacgcgacttcgtgcgactactgggcgtcgatcatgtctttgattcacgcaacctcgat
tacgtcgaacgcatcatggagcacacctccggtcaaggtgtagacgtcatcctcaacagc
ctggcgggagaagccatacgacgcaacctgagcgtgctcaagcccttcggtcgcttcctg
gaactaggcaaacgtgatttcttcgaaaacacccggatcgggttgcgaccattcaaggac
aacatcagctatttcggcatcgatgccgaccaattgctgacccgccgtcctgacttggcc
gcacgactgctaaaggaagtcatggcgctattccaggatggccatcttttcccgctgccc
tatcgtgccttcccggccgaacgtgtggaagaggccttccgtttcatgcagcaagccaag
catatcgggaaggtagtcgtgagcttggcggcagctccaaccttgcaactggagcatacg
gagccggccggtacgacactgaccagttccgggacctggctcatcactggtggcctctct
ggcttcggcctggaaacggcccgctggcttgcgcgaaatggggtacgcagcctggtgttg
gtcggtcgccgtggctgggccacgcctgcagcgaaggaggcggtggacacgctatcggcg
ctgggcgccgatgtccacgtacgtgcctgcgatatcagtgacaaagctgccgtcaccgca
atgatcgaacaactgcacgaccttgcggcgcccattcggggagtggtacacgcagcggcc
gtgttcgatgatggactgctggtggaccttgatgccgcgcgcatggctgcggtcatccag
cccaagctgctgggcgcctggaacctgcaccaggccaccctgaagcttgccctggatcac
ttcctgctctactcctcgctatcctgtgcgattggtaacccaggccaaggcaattacgtg
gctgccaatgctgccctggaaggattggcagcgatgcggcgccatcttgggctgccggtc
acctgtatcgcgtggggaccgatcgccgacactggctatctggccaggaatccgtcggtg
catcgcacgctggaacaacgcctgggttccatcctactggacagtcagcacgccctgcgc
cagctcgaacgcctgtcggtctgtacaccctcgctcattgttgccgacctggattggccg
cggctgtcaacccagctccctggtgcgacagcagagcgtttcgccctgttcaagcagtca
tcacatgccccagcacgaccggaccgcgcagacgaactgcagcacatcctgcgcacacga
tctacggaagacatccatcgactcatcgaggaccgggtaacccaagaactgtcccgcatc
ctcgccatcgcaccagagcgcatcggtcttgataccgccttgcatgagcttggattggat
tcattgatggcggtggaacttgccctgagcatcgagcaaggtttgcagttgaggttgcca
gcaatgttgctcaacgacgcaccgacggcacgaaaaatcatccggcggctggtcgctcaa
ctgcaagcaccgcgatctcctgctgaaactgatgaggcagcaactggcgtcatggaacgt
gtcatcgatgagctctcgaaccagcatggagaaatactgagccagcaagaactgcaagac
atcgcgcaagaggcccgcgccatgtcgcccaccaacttcaggacgacacgatga
DBGET
integrated database retrieval system
