Herbaspirillum rubrisubalbicans: Hrubri_4216
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Entry
Hrubri_4216 CDS
T04238
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase protein
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb00300
Lysine biosynthesis
hrb00470
D-Amino acid metabolism
hrb01100
Metabolic pathways
hrb01110
Biosynthesis of secondary metabolites
hrb01120
Microbial metabolism in diverse environments
hrb01230
Biosynthesis of amino acids
Module
hrb_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Hrubri_4216 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
Hrubri_4216 (dapF)
Enzymes [BR:
hrb01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
Hrubri_4216 (dapF)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DAP_epimerase
PhzC-PhzF
Motif
Other DBs
NCBI-ProteinID:
ALU91363
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All DBs
Position
4943024..4943887
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AA seq
287 aa
AA seq
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MKIKFTKMHGAGNDFVVLDAVNQAISLTPAQWQFIADRRFGIGADQMLVVEKAQGAGVDF
RYRIYNADGGEVEQCGNGARAFVRFVTEKGLTDKRAIRVETMSGVIEPRLEEDGQITVDM
GAPILTPAEVPFDSRNLQHRQQADDTLWPLEVAGKTTWISVVSMGNPHAVQVVEDSEAAP
VLVEGPLIEHHARFPKRVNAGFMQVLDRHHIRLRVYERGAGETLACGTGACAAVVAGIRR
GLLDSPVAVQTHGGLLNIAWAGPGAPVMMTGPAVTVFEGEIELPDQL
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatcaaatttaccaagatgcatggcgccggcaacgacttcgtcgtgctcgatgcc
gtcaaccaggccatttcgctcacccccgcccagtggcaattcatcgccgaccgccgtttc
ggcatcggcgccgaccagatgctggtggtggagaaagcgcaaggtgccggagtcgatttc
cgttaccgtatctataacgccgatggcggcgaagtcgagcaatgcggcaacggcgcgcgc
gccttcgtgcgcttcgtcaccgagaagggcttgaccgacaagcgcgccatccgggtggaa
accatgtcgggcgtgatcgagccgcgcctggaagaagatggccagatcaccgtggacatg
ggcgcgcccatcctgaccccggccgaggtgcccttcgacagccgcaacctgcaacatcgc
cagcaagccgatgacacgctgtggccgctggaggtggccggcaagaccacctggatctcg
gtggtgtcgatgggcaacccccatgcggtgcaggtggtggaagacagcgaagctgccccg
gtgctggtggagggtccgctgatcgaacaccatgcgcgcttccccaagcgcgtcaatgcc
ggcttcatgcaggtgctcgaccgtcatcacatccgtctgcgcgtctacgaacgcggtgcc
ggcgaaaccctggcctgcggcaccggtgcctgtgctgcggtggtggcgggcatccgtcgc
ggcctgctggattcgccggtggcggtgcagacccatggcggcctgctcaacattgcctgg
gctgggccgggcgcgccggtgatgatgaccggtccggcggtgacggtgttcgaaggcgag
atcgagttgccggatcagctttga
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