Herbaspirillum rubrisubalbicans: Hrubri_4306
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Entry
Hrubri_4306 CDS
T04238
Symbol
rfbC
Name
(GenBank) dTDP-4-dehydrorhamnose 3,5-epimerase
KO
K01790
dTDP-4-dehydrorhamnose 3,5-epimerase [EC:
5.1.3.13
]
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb00521
Streptomycin biosynthesis
hrb00523
Polyketide sugar unit biosynthesis
hrb00541
Biosynthesis of various nucleotide sugars
hrb01100
Metabolic pathways
hrb01110
Biosynthesis of secondary metabolites
hrb01250
Biosynthesis of nucleotide sugars
Module
hrb_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
Hrubri_4306 (rfbC)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
Hrubri_4306 (rfbC)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
Hrubri_4306 (rfbC)
Enzymes [BR:
hrb01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.3 Acting on carbohydrates and derivatives
5.1.3.13 dTDP-4-dehydrorhamnose 3,5-epimerase
Hrubri_4306 (rfbC)
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Motif
Pfam:
dTDP_sugar_isom
Motif
Other DBs
NCBI-ProteinID:
ALU91452
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All DBs
Position
complement(5045852..5046409)
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AA seq
185 aa
AA seq
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MNLQIMPTGIDGAVLISSRRRGDARGSFARWFCEEELAPVLGTSHIVQINHSFTEEVGSV
RGMHFQYAPMAEKKLIRCLAGRVFDVVLDLRAGSPTFLQWRGIELAAGDDRALLIPEGCA
HGFQVLQGGAALLYLHTAPYAPHAEGGVRHDDPRVAIAWPLPPCNLSPRDLQHPLLAPDF
DGIKL
NT seq
558 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgcagatcatgccaaccggcatcgacggggcggtgctgatatcgagccggcgt
cggggcgacgcgcgtggcagtttcgcgcgctggttctgcgaggaagagttggcaccggta
ctgggcaccagtcacatcgtgcagatcaatcattcctttaccgaagaagtcggtagcgtg
cgcggaatgcatttccagtacgcgcccatggcagagaagaaattgatccgctgcctggcc
ggacgtgtcttcgatgtagtgctggacctgcgcgccggctcgcccaccttcctgcaatgg
cgcggtatcgagctggctgccggggatgaccgcgcgctgctgatcccggagggctgcgcg
cacggcttccaggtgctgcaaggcggtgccgcgctgctgtacctgcatactgctccctat
gcaccgcacgccgaaggcggcgtgcgccatgatgatccgcgcgtggccatcgcctggccg
ctgccgccgtgcaacctgtcgccgcgcgacctccagcatcccttgctggctcccgatttc
gatggaatcaagctatga
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