Herbaspirillum rubrisubalbicans: Hrubri_4667
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Entry
Hrubri_4667 CDS
T04238
Symbol
ddpA
Name
(GenBank) ABC-type dipeptide/oligopeptide/nickel transport system, periplasmic component protein
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
hrb
Herbaspirillum rubrisubalbicans
Pathway
hrb02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
hrb00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Hrubri_4667 (ddpA)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hrb02000
]
Hrubri_4667 (ddpA)
Transporters [BR:
hrb02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
Hrubri_4667 (ddpA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Motif
Other DBs
NCBI-ProteinID:
ALU91811
LinkDB
All DBs
Position
complement(5501483..5503135)
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AA seq
550 aa
AA seq
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MKFPKTATLTLACTLAFGAFASLPAHAEKVLRIAMTAGDIPRTLGQPDQGFEGNRFTGIP
MYDGLTQWNLSKADKASELIADLALSWQVEPKDKTKWIFKLRPGVKFHDGSPFNADAVVW
NVNKVLDKNAVQFDPSQVGVTASRMPTLRSARKIDDLTVELTTSEPDSFLPINLTNLFMA
SPSQWEKKLAAVPASVTDKAERSKQAWAAFAADASGTGPFKMAKFVPRERLEVVKNDGYW
DPARRPKIDRVVMLPLPEANSRTAALMSGQVDWIEAPAPDALDAIKARGFKIYSNPQPHV
WPWQLSFLPGSPWLDKRVRHAANLCVNRPAMKQLLGGLMGEATGTVEPGHPWRGNPSFQI
KYDPAAAKKLMTEAGYSAAKPLTVKVQISASGSGQMQPLPMNEFMQQNLKECFFDVQFDV
IEWNTLYTNWRIGAKDPSAHGANAINVSFASMDPFFAMVRFVDTKAAPPTSNNWGFYSNP
EVDALIAKARTTFDPKQRDALLAQLHAKIVDEAPFVWVAHDTGPRAISAKVKGVVQPQSW
FIDIATMHMD
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
atgaaattccccaagaccgccaccctgacgctggcctgtaccctggccttcggcgccttc
gccagcctgccggcccatgccgagaaggtattgcgcatcgccatgaccgccggcgacatc
ccgcgcacactgggccagcccgaccagggcttcgagggcaaccgtttcaccggcatcccc
atgtatgacggcctgacgcagtggaacttgtccaaggccgacaaggccagcgaactgatt
gccgacctggcgctgtcgtggcaggtggagcccaaggacaagaccaagtggatcttcaag
ctgcgccccggcgtgaaattccacgatggctcgcccttcaatgccgatgccgtggtgtgg
aacgtcaacaaggtgctcgacaagaacgccgtgcaattcgatcccagccaggtcggtgtc
accgcctcgcggatgcccaccctgcgctcggccaggaagatcgatgacctgaccgtggag
ctgaccacctccgagccggattccttcctgcccatcaacctgaccaacctgttcatggct
tcgccctcgcagtgggaaaagaagctggccgcggtgccggcctcggtaaccgacaaggcc
gagcgcagcaagcaggcctgggcagctttcgcggccgatgcctcgggcaccggccccttc
aagatggccaagttcgtgccgcgcgagcggctggaagtggtcaagaacgatggctactgg
gatccggcacgccgccccaagatcgaccgcgtggtgatgctgccactgccggaagccaac
tcgcgcacagccgccttgatgtcgggccaggtcgactggatcgaagcacccgccccggat
gcgctggatgccatcaaggcgcgcggcttcaagatctactccaacccgcagccgcacgtc
tggccatggcagttgtccttcctgcccggctcgccctggctggacaagcgcgtgcgtcat
gccgccaacctgtgcgtgaatcgtccggccatgaagcaattgctgggcgggctcatgggt
gaggccaccggcaccgtcgaacccggccatccgtggcgcggcaatccgagcttccagatc
aagtacgatccggccgccgccaagaagctcatgaccgaagccggctattccgccgccaag
ccgttgacggtgaaggtgcagatctcggcctccggctccggccagatgcagccgctgccg
atgaacgaattcatgcagcagaacctgaaggaatgcttcttcgacgtgcagttcgacgtc
atcgaatggaacacgctctataccaactggcgtatcggcgccaaggacccgagcgcacat
ggtgccaatgcgatcaacgtgagcttcgcttccatggacccgttcttcgccatggtgcgc
ttcgtcgataccaaggccgcaccgccgacctccaacaactggggcttctacagcaacccc
gaggtcgatgccctgatcgccaaggcccgcaccaccttcgatcccaagcagcgtgacgcg
ctgctggcccagttgcacgccaagatcgtcgacgaagcaccgttcgtctgggtggcccac
gacaccggtccgcgcgccatctccgccaaggtcaagggcgtggtgcagccgcagagctgg
ttcatcgacatcgccaccatgcacatggactga
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