Haliotis rufescens (red abalone): 124113019
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Entry
124113019 CDS
T07893
Name
(RefSeq) transcription initiation factor TFIID subunit 4-like isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124113019
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrf03021
]
124113019
03036 Chromosome and associated proteins [BR:
hrf03036
]
124113019
Transcription machinery [BR:
hrf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
124113019
Coactivators
SAGA/TFTC/STAGA complex
124113019
Chromosome and associated proteins [BR:
hrf03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
124113019
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TAF4
TAFH
AAA_lid_RFC1
Motif
Other DBs
NCBI-GeneID:
124113019
NCBI-ProteinID:
XP_048254742
LinkDB
All DBs
Position
Unknown
AA seq
1006 aa
AA seq
DB search
MADPGSIDDLLSSEIDETAVSALVGSLESQLASPTNKEPPKTISDASVNNNHIGTSSTNV
TSTNPSFVANSTTSAGQKGLPIHNNTALNASFGPTSKSNLSENQILGIASIINSSPVPAT
TGGVSLLNVNTVNSKAANPSHIRIITQPQNNAINPTNTTVVHIPASHTGSFMNSIGNSNV
NSITTSVHGTSGLSATRDNSAASNAIYNLATIAAEQKPISVAQNGSPHQQTVQNIHRGKD
SSVSSSQPFLMKQEPGNGAVKQENNPNSPYIIKQEVKQESMNMQTIHLNVPGTHSDSSML
PGGAHLSGAGGNMHNVSISNIKGNASPSVITVRTQPQPHQHVTVVRPSVVSTQGTSGGPV
QIVNVNASGTRTTGMSKGGQRMSNPIRIAAQQPQQISIAPRQQSANTITLQPGGFQLQPG
TLLVKNEQGQLMLMSTTGQGAVPGSQSIVTTVPTSANKLQNVRPISTQGRSGTVQTYVTI
QPPVGQGRGQPTVLQQTGATMPVVNTHLPSTAPNTVQVPGSIGQPQAAVAGAGAAAQGVA
PHGPASQPMENVKKCKNFLSTLIKLASSQPPQTVRNVRELIQGLIDDRVQPEMFTARLQE
ELKSSPQPYLIPFLKKSLPLLRQCLISNKMTIEGVTAPKGKAMQQHVPAVQVQQAIQPNL
PVQHLQHQASNTLGYGGGTPQSPNVQFRLSNKGPPLHALPQPVQSLVRNKQGYTSSAPGA
MPTTVSALQAHMGASKSEPSHKEKRKFESLKDDDDINDVATMGGVNLTEESKNILATNAE
FIGTQIRSCKDETFLYHGPLLSRIHAIAKKHGVEEIASDVVNIISHATQERLRNMVERLS
TIAEHRIEIYKMDPRYEVTKDIKTQLNFLQELDKLEKKRHEEQEREILLRAIKSRSKNED
PEQMKLKQKAKEFQLQEIEAMRQKEANQTALLAIGPRKKRKTESADQGQGAGSSSSSLSN
GLGSSSVRPSMSRPRIKRVNLRDLMFLLEQERSSTKSNILYKAFLK
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggcggacccaggttctattgatgacttgctatcatctgaaatcgatgaaacagcagtg
agcgcgttagttgggtccctagaatcccagttagcttcaccaacaaataaggaaccaccg
aagacaatatcagacgcctccgtcaacaataatcatattggtacatcatccaccaatgta
acttccacaaaccccagttttgtagcaaactcgacgacaagtgccggacagaaaggtttg
ccaattcataacaacactgccctgaatgcttcctttggtcccacttcaaaatcgaatctt
tcagaaaatcagattcttggaattgcctctattataaactcctccccagtccctgcaacc
actggaggggtttccctgctgaatgtaaacactgtcaatagcaaggctgctaatccgtct
catatacggattatcacacaaccccaaaataatgcaatcaacccaacaaacacaactgtt
gtacatatacctgcttctcatacaggatcgtttatgaatagtataggcaacagcaatgtc
aattctattactacaagtgtacatggaacaagtggcttgagtgccaccagagacaactct
gcagctagcaatgctatttacaatttagccacaattgctgctgaacagaagcctatttca
gtagctcaaaatgggagtcctcatcaacagactgttcagaacatccacagaggtaaagat
tcatctgtgtcatcatctcagcctttcttaatgaaacaagagccaggaaatggtgcagtg
aaacaggaaaacaatccaaactcaccatatataataaaacaggaggtgaaacaggagtct
atgaacatgcagactattcatttgaatgtaccaggtacacattcagacagttccatgctc
cctggaggagcccatttaagtggtgcaggtggtaatatgcacaatgtgtcgatttcaaat
attaagggcaatgctagtccaagtgtgatcacagtgcggacgcaacctcaaccccatcaa
catgtgacggtagttcgaccgtctgtggtgtccactcaagggacaagtgggggacctgta
caaattgtgaatgttaatgcgtcaggtactcgcactacgggcatgtctaaaggggggcaa
aggatgtccaatcctatccgaatcgcagcacaacaaccccagcagattagcattgctcct
cggcagcaatcagcgaatacaataacattacagcctggtggattccaactgcagccaggg
acgctcctggtgaagaatgaacagggccagctcatgttgatgtccacgacggggcagggg
gctgtgccggggtcgcagtccatcgtcaccacagtaccaacatcagccaataagttgcag
aatgtcaggcctatatcaacacagggacgttctggtactgttcaaacgtacgttacaatc
cagccacctgtaggtcaaggtcgtgggcagcctactgtcctccagcagactggagccact
atgcccgtagtcaacactcatcttcccagtacggcccccaatacagtacaggttccaggg
tcaatcgggcagccacaagcagcagttgccggggctggggcggcagcacagggggtggcc
ccacatggtccagcgtctcaacctatggaaaatgtgaagaaatgtaaaaacttcctgtca
accctcatcaaactggcctccagtcagccaccacagacggtccggaatgtccgggaactt
attcaagggctcattgacgatagggtacagccagaaatgttcacagcaaggttacaggaa
gagttgaaatcttcaccacagccgtaccttattccatttttgaaaaaaagtctcccactg
ttgcgtcagtgtcttatatccaacaagatgacaatagaaggagtgacagcgcctaaaggc
aaagccatgcagcagcacgtaccagcagtacaagttcaacaagccatacaacccaatctg
ccagtccagcatctgcagcaccaagcctcgaatactcttggatatgggggaggaacacct
caaagtcctaatgtccagttccggttgtcaaataaaggtcctcctctacatgcactgccc
cagcctgttcagtcattagtccgcaacaagcaggggtacacctcctccgcccctggagcc
atgccaaccactgtcagtgccttgcaggctcacatgggagcaagcaagagtgaaccttca
cataaagagaagagaaagtttgaatctctcaaagatgatgatgacatcaatgatgtggct
accatgggtggcgtcaacttaacagaagaatccaaaaatatattagcaaccaatgcagaa
tttatcggaacacaaataagatcatgtaaagatgaaacatttctttatcatgggccatta
ctcagtaggatacatgcaatagctaaaaaacatggtgtggaagaaattgcatcagatgta
gttaatattatttcccatgcaacacaagaaagacttaggaatatggtagaacggttgtcc
acaatagcagaacatagaatagaaatttacaagatggacccaaggtacgaggttacaaaa
gatataaaaactcagttaaattttttacaagaattagacaagttagaaaaaaagcgtcac
gaagagcaagaaagagagatactgttaagagcaataaagagtcggtccaaaaatgaagat
ccagagcagatgaaattgaaacaaaaagccaaagagtttcagctacaggagatcgaggcc
atgaggcagaaggaagccaaccagaccgctctacttgccatcggtccacgcaagaagcgg
aaaacggaatcggccgatcaggggcaaggggcgggttccagcagcagctctctcagcaac
ggtttaggttcttcgtcagtaaggccttcaatgtcaaggcccagaataaaacgagtgaat
ctcagggacttgatgttcttgttggagcaggagcgatcgtccactaagtccaacatcctc
tataaagcattcctaaagtga
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