Haliotis rufescens (red abalone): 124113388
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Entry
124113388 CDS
T07893
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like isoform X1
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
hrf
Haliotis rufescens (red abalone)
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrf03041
]
124113388
Enzymes [BR:
hrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124113388
Spliceosome [BR:
hrf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124113388
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
HA2_C
OB_NTP_bind
Helicase_C
R3H
DEAD
HA2_N
Ank_2
AAA_19
Ank
AAA_22
FtsK_SpoIIIE
nSTAND3
ATPase
UvrD-helicase
SRP54
Motif
Other DBs
NCBI-GeneID:
124113388
NCBI-ProteinID:
XP_046329651
LinkDB
All DBs
Position
Unknown
AA seq
1646 aa
AA seq
DB search
MAARDRLGRPQNGNSRHYQEAPGSYNAAYNRGSFQRLDTASPRPSSVGSVQSVQGLSPRG
PRPNQPICIGEEVRIGIHLTVERFKLSENQKELEFPSSLSATERAYIHRLCDDLGMKSKS
RGKAANRFLTIYKKDSNQAVSYASGFQLSRNSRQQAVSLLQRFPLSNKERQDLQPKTQKS
PLGEVTREFNKMTTGRLNNGIPQVPPSRNETDLDPFREGLPIQQLREDIIYATNHNQVML
VAGETGSGKTTQVPQMILDDCCKNNKPCRIFCTQPRRIAALSIAERVAQERGERIGQTVG
YQIRLESKVSPKTLLTFCTNGVLLRTLMGGDNALGTLTHIIVDEVHERDRISDFLLAVVK
DLLHKYKNLRLILMSAALNTELFIKYFSSCPVAFVPGTLFPVEEHFLEDILKWTSYTNKK
MEKYRKELSKVKSQQEHLDEWCTQGVSTEGHRASMEEDYTSDRILDNRQAEGKELGEERE
DLEPWVVKEMDKLLSEVWLSGEEEVFSQIFHLIMAENVSVDYKHSETSATPLMIAGGRGL
SVTVEQLLSLGANINVRASNEWTALDWAKKFKRNDIVEMLESYTASVECASEDGTEDAVV
SAEDRELLNIYHHSFDDEKVDTDLISALIYTIMSSKKEGAILVFLPGYDDIVSLRDGIAD
DKKYESFRYVLYTLHSSMQSNDQRKVFKMAPQGVRKIILSTNIAETSVTINDVVFVIDSG
KVKEKSFDALSSCSMLKSNWISKASGLQRKGRAGRCRPGVCYHMFSRIRYSSMQEYQQPE
ILRYPLQELCLFTKLLAPVNMSIADFLAKCPEPPSFLITRNAVQLLKQMDALDTWEDLTE
LGHHLTDLPVEPRLGKMVLYSVVLKCLDPILTIVCALAYKDPFTLPSQPHQKRSAAMARR
KFASGTFSDHMALLRAFQAWQKARTEGWERSFCDRNFLSSASMEMIVGMRTQLLGQLRAS
GFVRARGGGDIRDLNTNSENWAVVKAALCAGMYPNIACVDRNRNVVVTQKESKVRFHSSS
VLSPAPTTEWVNVASTHAKSVRMLQGDWLIYEEMTRFNKMASAKCCTVLSAVAVAIFAGP
SKLPPEAIREAEGIHDREAGDGMYADNSSDSEGEDKEDLKKSTLQLDDWLCFRLDKESAN
LVLQLRQKWHSLFQRRMKAPSKPWSQMDEAVVRAVINVLTNEEQSQGLQQPAGIGQRPRP
MSAESMMTTGSSRGYIEADDNQSKYNIRRYPATPPKRKEINLKGSKTSEDRLETSSVHSN
SASNSSANSLKGSAGSTPCPSPQPSSPSKWAERDPGGNSSHPCRLFVMKCNNQKNLDISL
QKGLWATSVSNEKKLNKAFQDGKTVYLIFSIQGSGHFQGYAKMLSEIRKDKSQDFISPGL
SGNFAIEWVKRAMIPFQSTHHLTNPWNESKKVQVSRDGQEIEPSVGEALLKLWDKYPNYQ
KRSSPSSGTKVILKHNNSTTPKLLSKDCDTPDQKDNGDSDSQAESGPADNATKSSSSSSL
TRSNSSTSSQGSGHSSNTPTSQKGHYQGQGSHGGQGHYQGHGHNHHHQNRHGGGGGGGHY
VPHGNMGHVGGHHGMGMFNQNHFQHGYNQMGYMGPMMHQHQHLPSSPRGGISPVMILQRG
SHSSGHGRANFQGHHGYNSGPGSYHH
NT seq
4941 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgagacagactgggtcgtcctcaaaatggaaattccaggcactaccaggag
gcgcctggttcatacaatgctgcatataatagggggtcatttcagagactggacacagct
tcaccccggcccagcagcgttggtagtgtgcagagtgtgcagggcctgtcaccccgggga
cctcgtccaaaccagccaatatgtattggcgaggaagtcagaattggcatacacttgaca
gttgaaagatttaagctcagtgaaaatcaaaaagagctggagttcccctcatccctgagt
gcaacagagagggcatacatccaccgactgtgtgatgatctgggcatgaaatccaagagt
cgagggaaagccgccaatcgcttcctcacaatatacaagaaggattctaatcaagcagtg
agctatgcgtctggcttccaactgtcccgcaactccagacaacaagcagtcagtctgtta
cagaggttccccctctctaacaaggagcgccaggaccttcagccaaagacacaaaagtca
cctctcggggaagttaccagggaattcaataagatgacaactggacggttgaacaatggc
atcccccaggttcccccctcccgaaatgaaaccgaccttgacccgttcagggaaggctta
ccgattcaacagcttagagaagatatcatttacgccacaaatcacaaccaagtcatgctg
gtggcaggagagaccgggtcgggcaaaactactcaggtgcctcagatgattttagatgat
tgttgcaagaacaacaaaccatgcagaatattctgcactcagccgcgtaggattgcagct
ctcagtatcgctgaacgtgtcgcacaggagagaggagagaggattggtcagacagtgggc
taccagatacgattggagagcaaagtgtctccgaagactttgctgacattctgcaccaat
ggagtgttgctgaggacgctgatgggaggtgataatgccctgggcactctcacacatatc
attgttgatgaggtacatgagcgggatcggatcagcgacttcctgctggcagtcgtgaag
gacctgcttcacaagtacaagaacctacgcctcattctcatgagtgctgccctcaacacc
gaactgttcatcaagtacttcagcagctgccctgtagcttttgtcccaggcactctgttt
cctgtagaagaacactttttagaagatattctcaaatggactagctacacaaacaagaag
atggaaaaatacaggaaggagctgagtaaagtgaagagtcagcaggagcacctggatgag
tggtgcacacagggggtgtccactgaggggcaccgggccagcatggaagaggactacacc
tccgacaggatcctcgacaacaggcaggctgagggcaaagagctgggggaggagcgggag
gacctggagccatgggtggtgaaggagatggacaagctgctgagtgaggtgtggctctcg
ggggaggaagaggtcttctctcaaatcttccatctgatcatggctgagaatgtcagtgtg
gactacaagcacagtgagacaagtgccactcccctgatgatagcaggtgggcggggctta
tctgtgacggtggagcaactcctcagtctgggtgccaacatcaacgtcagagcgtcaaat
gaatggacagctcttgactgggccaaaaaattcaaaagaaatgacattgttgaaatgcta
gagtcatatactgcttccgttgagtgtgccagcgaggatgggacggaagatgcagttgtc
tcggctgaagaccgtgaactcctcaacatctaccaccacagcttcgacgacgagaaagtg
gacacagacctcatctctgcactcatatacacaatcatgtcatcaaagaaggaaggtgct
atactagttttcctacctggatatgatgatattgtcagcctcagggatggcattgctgat
gacaagaaatatgaaagttttaggtacgtgttgtatacactccactcctccatgcagtcc
aacgatcagaggaaggtctttaagatggcaccgcaaggagtccgcaaaattatactttcc
accaacattgctgagacaagtgtcacaattaatgacgtagtctttgtcatcgattcagga
aaagtgaaagagaaatcatttgatgctttgtcttcatgctctatgctgaagagcaactgg
atctctaaggccagtggtttgcagaggaaagggagagctggtcggtgtcggccgggggtc
tgctatcacatgttcagccgtattcgctacagcagtatgcaagagtaccagcaaccagaa
atcctcagatatccactccaggagttgtgcctcttcaccaagctgttggcccctgtcaac
atgagcatcgctgacttcctcgccaagtgtcccgaacctccatcttttctcatcacgagg
aacgcagtccaactcctaaagcaaatggatgcactggacacgtgggaggatctgacggag
ctaggccaccatctgactgacctccctgtggagccccgtctgggcaagatggttctgtac
tcggtggtgctcaagtgtcttgaccctatcctcaccattgtctgcgctctggcttacaag
gacccattcaccctcccctcacagcctcaccagaagaggtctgcagctatggcacggaga
aagttcgcttcaggaacattcagtgaccacatggctctcctccgagctttccaggcatgg
cagaaggctcggacagagggttgggagagatccttttgtgacaggaacttcctctcctcg
gccagcatggagatgatagttggcatgagaactcagttgttgggtcagctgagagcctca
gggtttgtacgagctcggggcggcggtgacatccgggacttgaacaccaactcggagaac
tgggctgtggtgaaggctgccctgtgtgctggcatgtaccccaacattgcatgtgtggac
cggaacaggaacgttgtcgtcactcagaaagagtccaaggtgcgtttccacagcagctct
gttctaagccctgcccccacaactgagtgggtgaatgtggcctccacccatgccaagtct
gtccgcatgctccaaggggattggttgatctatgaggaaatgacccgcttcaacaagatg
gccagtgccaagtgctgcacagtcctgtcagctgtcgctgtggccatctttgctggtcca
tccaagctgccgccggaagccattagggaggcagagggcatccatgaccgtgaggcgggt
gacggcatgtacgctgacaacagcagcgacagtgagggggaggacaaggaggacctgaag
aaatccaccctgcagttggacgactggctgtgtttccggctggacaaggagtcggccaac
ttggtgctgcagctgagacagaagtggcacagtctattccagaggaggatgaaagctccg
tccaaaccatggtcgcaaatggatgaggccgtcgtacgagctgtgataaatgtcctcacc
aatgaggagcagtctcagggtctgcagcaaccagctggtattggacaaagacccagacct
atgtcggcagagtccatgatgacgacaggcagcagtcgaggctacatcgaggccgatgac
aaccagagcaagtacaacatccgcagatacccagcaactccacccaagagaaaggaaatc
aacctcaaaggcagcaagaccagtgaagacagactggagacatcctccgtccacagcaac
tcagccagcaacagcagcgccaacagcttgaagggcagcgccggcagcaccccctgccct
tccccccagccctcctccccctctaagtgggcggagcgggaccctggggggaacagctcc
cacccttgcaggttgtttgtgatgaagtgtaacaaccagaagaacctcgacatctccctg
cagaaggggttgtgggccacgtccgtcagcaatgagaagaaactcaacaaggcattccag
gatggcaagacggtctacctgattttctccatacaaggcagcggtcacttccagggttat
gccaagatgctgtctgaaatccgaaaggacaaatcacaagattttatttcacctggcctt
agtggtaactttgccattgaatgggtcaagagggcaatgatccccttccagagcacacac
catctgaccaacccctggaacgagagcaagaaggtccaggtcagcagggacggccaggag
attgagcccagtgttggagaagccctcctgaagctctgggacaagtacccgaactaccag
aagcgctcgtccccatcttcaggaaccaaggtcatcctgaagcacaacaactcaactaca
ccaaagctcctgagcaaagactgtgatacgcctgaccagaaagacaatggtgacagtgac
agccaggcagagtctggtccggcagacaatgccacaaagtcctccagctcctcatccctc
acccgatccaattcatccaccagcagccagggatcggggcatagctcaaacactcccact
agtcagaaaggtcactaccaaggtcaagggtctcatggaggtcaaggacattatcaaggt
catggccacaaccaccatcaccagaatcgccatggtggaggaggtggcgggggtcattac
gttccccacggcaatatgggacatgtaggaggacatcatggaatggggatgttcaaccaa
aaccactttcagcatgggtacaaccaaatgggctacatgggccccatgatgcatcagcat
cagcacctgccctcctcaccgagagggggcatttcacccgtcatgattctacagagaggt
agccattcatctggtcatggtcgtgcaaactttcaaggtcaccatggttacaactctggg
ccaggctcatatcaccactga
DBGET
integrated database retrieval system
