Haliotis rufescens (red abalone): 124114406
Help
Entry
124114406 CDS
T07893
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124114406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrf03019
]
124114406
03041 Spliceosome [BR:
hrf03041
]
124114406
Messenger RNA biogenesis [BR:
hrf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124114406
Spliceosome [BR:
hrf03041
]
Complex B
Other components
Prp19-related factors
124114406
Complex C
124114406
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_2
TPR_8
Mad3_BUB1_I
TPR_15
TPR_10
NRDE-2
ARM_TT21_C
ARM_TT21
VAD1-2
Motif
Other DBs
NCBI-GeneID:
124114406
NCBI-ProteinID:
XP_046330916
LinkDB
All DBs
Position
Unknown
AA seq
854 aa
AA seq
DB search
MPVAEDTSRNDIFFEDEDLPYEEDILRNPFSVKCWLRYLEHKKEAAREVVNMIYERALKE
LPGSYKLWYNYLKLRRTQVRGRCVTDPAYEDANSAFERALVFMHKMPRIWLDYCQFLIDQ
GKITRSRRTLDRALRALPITQHNRIWPLYLKFVRMYDLPETAVRAYRRHLKLQKENTEQY
IEYLKTIGWLDEAAIRLADVINDETFVSREGKSKHQLWNELCELIAKNPDKVSSLKIEPI
IRQGLKRYTDQIGVLWNSLANYYIRGRHFERARDIYEEAIQTVITVRDFTQVFDEYAKFE
KSMIAAKMEAMEEAGASDEDDLDLELRLARLESLMDRRPLLLNSVLLRQNPHNVHEWHKR
VTLFEGKPREIINTYTEAVQTVDPQLASGKPNTLWVEFAKFYENAKQIEDARVIFEKAVK
VPYKHVDDLASVYCEWSELEIRHENNEGALKLMQKATMPPPRKVAYHDETETVQSRVHKS
LKVWSLYADLEESFGTFKSCKAVYDRIIDLRIATPQIIMNYGMFLEENNYFEEAFKAYEK
GIALFKWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQCLEKCPEKFAKALYLLYARLE
EEHGLARHAMAVYERATNAVLPEEQYEMYNVYIKQAAEIYGVTHTRSIYEKAIEVLPNQE
AREMSLRFADLERKLGEIDRARAIYAHCSQICDPRVAPSFWATWKEFEIKHGNEDTVREM
LRIKRSVQAIYNTQVNFMSSQMLAAAGKGDAPAAAGGVVVEPNEMQKLEEKARQLAEEAV
RDQPQQPDKKLLFVRSSTTADDIGEMVKTVNPEEINIDSDFSSDDDEEVEEVEVQTQIIP
NKVFGGLVNEEEED
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgccggtagccgaagatacatcaaggaatgacattttctttgaagatgaggatctgccg
tatgaggaagatattctgaggaacccgttctcggtgaaatgctggctccgctacttagag
cacaagaaggaggcggcccgggaggtggtcaacatgatctatgagcgggcactcaaggag
ctgccggggagctataaactgtggtataactacttaaaactgcggcgaacccaagtacga
ggccggtgtgtcacagatccggcttatgaggatgccaacagtgccttcgaaagggctctc
gtgttcatgcacaagatgccccgaatctggttagactattgccagttcctcatcgaccag
gggaagataacccgatcccgccgtacgcttgaccgagcactccgcgccctgcccataact
caacacaacagaatatggcctctgtacctcaagtttgttcgcatgtatgatctgcctgag
acagccgtccgtgcctacagaagacatctcaagctccagaaggagaacacagagcagtac
attgagtacttgaagaccattggctggctggatgaagcagccattagactggctgacgtc
atcaatgatgaaacatttgtctcaagggagggcaaatcaaaacatcagttatggaatgag
ctgtgtgagctgatcgccaagaaccctgacaaggtgtcatcactgaagattgagccaatc
atccgccagggcttgaagcgctacaccgaccagattggtgttctgtggaactctctggcc
aactattacatccgtggccgacacttcgagcgggcaagggacatctacgaggaagccatt
cagacagtcatcactgtacgtgacttcacacaggtgtttgacgagtacgccaagtttgag
aagtccatgattgccgccaagatggaagctatggaggaggctggtgcttctgatgaagat
gaccttgaccttgagttgcgtcttgcgaggctggagagtctgatggaccgtcgaccactt
cttctcaacagcgtccttctgcgacagaaccctcacaatgtccatgagtggcacaagcgg
gtgactctgtttgaagggaaaccaagagagatcatcaacacatacaccgaggcagttcag
acagtcgacccacagctggcgtccggcaagccaaacacactctgggtggagttcgccaag
ttctacgagaatgccaagcaaatagaagatgctcgggtgatctttgagaaggctgtgaag
gtgccgtacaagcatgtggatgacctcgcctctgtgtactgcgagtggtcggagctggag
atcagacatgaaaataatgaaggagctctgaaactgatgcagaaggcgacaatgccgcct
cccaggaaggtagcctaccatgacgagacggagacagtgcagtcgagagtccacaagtct
ctgaaagtgtggtccctgtacgctgacctggaggaaagcttcgggacattcaagtcgtgt
aaagctgtgtatgatcgcatcattgacctccggattgcgaccccgcagatcatcatgaac
tatggaatgttcctcgaggagaataactactttgaggaggctttcaaggcctacgagaag
ggaattgcattattcaaatggccgaacgtgtatgacatctggaatacctacctcaccaag
ttcatcgacagatacggcggcaagaaactagagagagcaagggacctgttcgagcaatgt
ctagaaaaatgtcctgagaagtttgccaaagcactgtatctgctgtatgcacgactggag
gaggagcatggactggcacgtcacgcaatggcggtgtacgagagagccactaatgctgta
ctgccggaggaacaatatgaaatgtacaatgtgtacataaagcaggctgcggagatctat
ggcgtgacacacacacggtccatctatgagaaggccatcgaggtgctgcccaatcaagaa
gctagggagatgagtctgaggtttgcagacttggagaggaagttgggagagatcgaccga
gcgcgagctatctatgcccactgctcccagatctgtgatcccagggtagcaccatcattt
tgggcgacctggaaggagtttgagatcaaacatggcaatgaggacactgtgagagaaatg
ctgaggatcaaacgcagtgttcaggccatatacaacacacaggtgaacttcatgtcatcc
cagatgctggctgcagcaggtaagggtgatgcaccggctgcagcaggcggagttgtcgta
gagcccaacgagatgcagaagctggaggagaaggcacggcagctagcggaggaggcagtg
cgagaccagcctcagcagccggacaagaaactactgtttgtcaggagctcgaccacggca
gatgatattggcgagatggtgaagaccgtcaaccctgaggagatcaacattgactctgac
ttctccagcgatgatgatgaggaagtagaggaggttgaagtacagactcagatcatcccc
aacaaggtgtttgggggacttgtcaacgaggaggaggaggactaa
DBGET
integrated database retrieval system
