Haliotis rufescens (red abalone): 124115582
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Entry
124115582 CDS
T07893
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124115582
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrf03019
]
124115582
03041 Spliceosome [BR:
hrf03041
]
124115582
03009 Ribosome biogenesis [BR:
hrf03009
]
124115582
03016 Transfer RNA biogenesis [BR:
hrf03016
]
124115582
Enzymes [BR:
hrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124115582
Messenger RNA biogenesis [BR:
hrf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124115582
Spliceosome [BR:
hrf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124115582
Complex C
U4/U6.U5 tri-SnRNP related factors
124115582
Ribosome biogenesis [BR:
hrf03009
]
Eukaryotic type
Pre-60S particles
Helicases
124115582
Transfer RNA biogenesis [BR:
hrf03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124115582
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
ResIII
AAA_22
Helicase_dom4_arc
nSTAND3
Motif
Other DBs
NCBI-GeneID:
124115582
NCBI-ProteinID:
XP_046332583
LinkDB
All DBs
Position
Unknown
AA seq
1031 aa
AA seq
DB search
MANSFGDDLFDVFDEKSDSNPAKQIEEKDASSTESLSDEKRAEDLLRQIVGKTKRAAGTE
FESQESKKQKTEDGTGDANTEVLPRIQVHRVETVEACLHEVAVPPDEEFVPLKPSQKKSA
KDFPFILDPFQKEAILCLENNQSVLVSAHTSAGKTVVAVYAIAMSLQVKQRVIYTTPIKA
LSNQKYRELFEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDE
IHYMRDKERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTDFRP
IPLQHYIFPAGGDGLHLVVDENGDFREENFNTAMGVLKDAGDASKGDQRGRKGGSKSHES
NCFKIVKMIMERSFAPVIVFSFSRKDCEGYAMQMAKLDFNTEEEKGLVEEVFNNAIDSLS
DEDKKLPQVENVLPLLKKGVGIHHSGLLPLLKETIEILFSEGLIKALFATETFAMGLNMP
ARTVLFTAARKFDGKDFRWVTSGEYIQMSGRAGRRGLDERGIVILMVDEKMSPAVGKTLL
RGLPDPLNSAFHLTYNMVLNLLRVEEINPEYMLERSFYQFQNYAAIPDLVEKLRQKEEDY
RSMKIQNEDQVASYFKIRQQLDNLGHDMMHFIQKPAYLLPFLQPGRLVKVKNKEDDFGWG
VVINFQKKMDQSKATDDTGPLYIAEVLMYITKESAKSRKTTDIKPCPKGQRGEMQVVPVL
TTLIEGISAIRLYVPQDLKSNDKRQSVYKSLQEVEKRFPDGLPPLDPIEDMGIKDKKLQE
IIKKTEAFEHRLYSHPLHKDAQLEELYSLYDRKSRLGNEVKAIKSELKKKKSLLQMDELK
CRKRVLRRMGYATSSDVIEIKGRVACEISSADELLLTELLFNGVFNNLTEQQSCALLSCF
VFQENSNEMPKLTEELSGPLRIMQDTARRIARVSREAKLEHLEEEAYAEAFRPHMMDVVN
AWCNGSTFAQLCKMTDIFEGSIIRCMRRLEELLRQMVQAAKAIGNTELENKFSEAIRRIK
RDIVFAASLYL
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atggcaaattcttttggagacgacttgtttgatgtttttgatgaaaaatcagattcaaac
cctgctaagcaaatcgaagaaaaagatgcttcttccaccgagagcttaagcgacgagaaa
agagctgaagacctccttcgacagattgtcgggaaaactaagagagcagcagggactgaa
tttgaatcccaggagtcgaagaagcaaaaaacagaagatggtactggtgatgccaacaca
gaagtcctgcctcgaatccaagtacacagagtggaaacagtggaggcctgtttgcatgag
gtggctgtgcctcccgatgaagagtttgtgcctctcaaaccctcgcagaagaaatctgct
aaagacttccccttcatcctagatccgtttcagaaggaggcaattctctgtctggagaac
aaccagtcagtgctggtgtccgctcacacgtcagcgggaaagaccgtcgtagctgtgtac
gctattgccatgtcactacaagtgaagcagagagtcatctacacaacccccatcaaggct
ctgagtaatcagaaatacagagagctgtttgaggagttccaggacgtgggcctgatgacg
ggagacgtcaccatcaaccccaccgccagctgcctcgtcatgaccacagagattttgaga
agcatgttgtatcgtggatcggaggtgatgagagaggtggcctgggttatatttgatgag
atccattacatgagagacaaagagaggggcgtggtttgggaagaaaccatcatcttgctg
cccgacaacgtgcactacgtgttcctctccgcaaccatccccaacgcccgccagtttgct
gagtggatctgtcacttacacaaacagccgtgccatgtcgtgtacaccgacttccgcccc
atccccctccagcactacatcttccctgcgggcggagacggactccacctggtggtggat
gaaaacggggattttcgggaggagaacttcaacactgcgatgggtgtattgaaggacgca
ggtgatgcttccaagggagatcagcggggtcgtaaaggtggctccaagagtcacgagtcc
aactgcttcaagatcgtcaagatgatcatggagagaagctttgccccagtgattgtgttc
agcttcagccggaaggactgtgaaggatatgcgatgcaaatggccaaactagacttcaac
acagaagaagagaagggcttggtagaagaagtgtttaacaatgctatagattcactgtct
gatgaggacaagaaactaccacaggtggagaatgtgctgccacttctgaagaaaggtgtt
gggatccatcactcggggctgcttcccctgctgaaagaaaccattgaaattctcttctca
gaaggcctcatcaaggcattatttgccacggagacattcgccatgggcttaaacatgccg
gctaggactgtgctgttcacggccgccaggaagtttgatggcaaggacttcagatgggta
acgtctggtgagtacatccagatgagtggtcgggctggacgtcgtgggttggacgagaga
ggaattgtcatcctgatggtggacgagaagatgagtccagctgttggcaagacactgctc
aggggcctgcccgaccccctgaacagtgccttccacctcacctacaacatggtgctcaac
ctgctgcgtgtggaggagatcaaccccgagtacatgctggagcgatccttctaccagttc
cagaactacgccgccatccccgacctcgtggagaagctgcgtcagaaggaggaggactac
aggtccatgaagatccagaatgaggaccaggtggcctcatacttcaagatccgacagcag
ctggacaacctgggccacgacatgatgcacttcatacagaaacctgcctacctgcttccc
ttcctgcagcctggcagactcgtcaaggtgaagaacaaagaagatgattttggctggggt
gttgtcatcaacttccagaagaagatggaccagagcaaggcgaccgatgacacaggacct
ctctacatagctgaagtattgatgtatataaccaaggaaagtgcaaaatctcgtaaaaca
acggacataaagccttgtcccaaaggccaacgcggggaaatgcaggttgtaccggtgttg
acgacgctgatcgagggaatcagtgcgataagactgtacgtcccacaggacctcaagagt
aacgacaagaggcagagtgtctacaagtctctccaggaggtggagaagcgcttccctgat
ggcttacctccccttgaccctatagaggatatgggcatcaaggacaagaagctacaggaa
atcatcaagaaaaccgaagcctttgaacatcgtttatactctcatccactccataaggat
gcccagttagaggagctgtattccttgtatgacaggaagtctcggctcggtaacgaggtg
aaggccatcaaatctgagctgaagaagaagaagtccctgctgcagatggacgaactcaag
tgtcggaaacgcgttctccggagaatggggtatgcaaccagctctgacgtcatcgagatc
aaaggccgggtggcgtgtgagattagcagtgcggacgagctgctgctgacagagctgttg
tttaatggtgtcttcaacaacctgaccgagcagcagtcctgtgccctcctcagctgcttc
gtgttccaggagaactccaacgagatgcccaaactgaccgaggagctctccgggccgctg
cgtatcatgcaggacaccgctcggcgtatcgcccgggtcagtcgggaggccaagctggag
cacctggaggaggaggcttacgccgaggcattccgccctcacatgatggacgttgtcaac
gcttggtgtaacggatcaacatttgcccagttgtgtaaaatgaccgacatctttgaaggt
agtataatcaggtgtatgcggaggctggaggaactactcagacagatggtgcaggcagct
aaagccatcggaaacacggagcttgaaaacaagttctcagaagcgatcaggagaatcaag
agggatattgtatttgctgctagtctgtacttatag
DBGET
integrated database retrieval system
