Haliotis rufescens (red abalone): 124115906
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Entry
124115906 CDS
T07893
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124115906
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrf03041
]
124115906
03009 Ribosome biogenesis [BR:
hrf03009
]
124115906
Enzymes [BR:
hrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124115906
Spliceosome [BR:
hrf03041
]
Complex A
U2 snRNP components
U2 related factors
124115906
Complex B
124115906
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124115906
Ribosome biogenesis [BR:
hrf03009
]
Eukaryotic type
90S particles
Helicases
124115906
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
Cas3-like_C_2
nSTAND_NTPase5
ResIII
AAA_7
Flavi_DEAD
NACHT
AAA_29
TsaE
AAA_25
PhoH
Motif
Other DBs
NCBI-GeneID:
124115906
NCBI-ProteinID:
XP_046333024
LinkDB
All DBs
Position
Unknown
AA seq
737 aa
AA seq
DB search
MSKRHRIDVGDSHGKRNRDDDRDKDRDRDRDRDRDKDKDKPKSIFEQFNIPRPTLQMNPF
TGMPYSPRYYQLLNKRMTLPVWEYKEKFMEMMTKYQTIVLVGETGSGKTTQIPQWCLEWV
RARFAKKAVACTQPRRVAAMSVAQRVSEEMDVGLGQEVGYNIRFEDCTSSKTVMKYMTDG
MLLREAMSDPLLEAYGVIMLDEAHERTLATDILMGLLKEVAKQRSDLKIVVMSATLDAGK
FQHYFDKAPLMSVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEGDGDILLFLTGQ
EEIDEACKRLSREVDNLGPDVGNLKCIPLYSTLPPAQQQRIFEPAPAKKPNGAIGRKVVV
STNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTQPG
KCFRLYTEKAYKQEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRA
LELLNYLAALDDDGEITELGSMMAEFPLDPQLAKMVIASCDFSCSNEILSITAMLSVPQC
FVRPAEAKKPADEAKMRFAHIDGDHLTLLNVYHAFKQNQEDQQWCYDNFINFRSLKSADN
VRQQLARIMDRFNLRRSSTDFTSRDYYINIRKALVSGYFMQIAHLERTGHYLTVKDNQVV
QLHPSTVLDHKPEWVLYNEFVLTTKNYIRTVTDIKPEWLIKIAPQYYDMSNFPNCEARRM
LERIIAKLESKQYQEGF
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggcatcgtattgatgtgggcgattctcacggcaaaaggaacagagatgac
gaccgagacaaagaccgggaccgggatcgggatcgggacagagataaggacaaggacaag
cccaagtccatatttgagcagttcaacatcccgagacccacgctgcagatgaatcccttc
acagggatgccctactccccccgctactaccagctgctcaacaagcggatgacgctgcca
gtctgggagtacaaggaaaaattcatggagatgatgaccaaataccagaccattgtcctg
gtgggagaaactggctctggcaagaccacacagatcccccaatggtgccttgagtgggtg
cgagctcggtttgccaagaaggctgttgcgtgtacacagcctagaagggtggcggccatg
tcggtggctcagcgtgtgtcagaggagatggatgtcggcctggggcaggaagtgggatac
aacatccgttttgaggattgcacctcatctaaaacagtcatgaagtacatgacagatggt
atgttactgagagaggccatgtcggaccccctacttgaagcttatggagtcatcatgttg
gatgaagctcacgagcgtacccttgcgactgacatcctcatgggcctgttaaaggaggtc
gccaaacagcgatcggatctcaagattgttgtcatgagcgctaccctcgatgccggcaaa
ttccagcactattttgacaaggccccactgatgagtgtccctggtcgtacacatcctgtg
gagatcttctacacacccgagccagagcgtgactacctggaggccgccatcaggactgtc
gtacagatccacatgtgtgaggagggagacggagacattcttctcttcttgacaggacag
gaggagattgacgaggcgtgcaagagactgtctcgggaggtggacaacctgggtcctgac
gtgggcaacttgaagtgtatccctttgtactcaaccctccccccagcccagcaacagcgc
atcttcgagcctgcccctgccaagaagcccaacggagccatcgggaggaaggtggtggtc
tccaccaacattgctgaaacatccctgacaattgatggtgttgtgtttgtgatagaccct
ggctttgccaaacagaaggtgtacaacccccgtatccgagtggagtctctcctggtgact
gccatcagtaaagccagcgcccagcagcgagccggccgagctggcaggactcagccgggg
aagtgtttccgtctgtacacggagaaggcgtacaagcaggagatgcaggacaacacgtac
cctgagatcctccggtccaacctcggctctgtagtgctgcaactcaagaagcttggtatc
gatgatctcgtgcacttcgacttcatggatccacctgctcctgagacgttgatgagggca
ctggagttgttgaactacctggcagcccttgatgacgacggagagatcacagaactcggc
tccatgatggctgagtttccactggatccacagctcgctaaaatggttattgccagctgt
gatttcagctgttccaacgagattctgtcgataacggccatgttgtcagtcccgcagtgc
ttcgttcgaccggctgaggccaagaaacctgcagacgaggctaagatgaggttcgcccac
atcgatggtgatcacctcactctgctcaacgtataccatgctttcaagcaaaaccaggag
gaccagcaatggtgttatgacaacttcatcaacttccggtcactgaagagcgcggacaat
gtgcggcagcagcttgctcgcatcatggatcgcttcaacctgaggcggtccagcactgac
ttcaccagccgagactactacatcaacatcaggaaggcgttagtctccggttacttcatg
cagatcgctcacctggagcggacgggtcactacttgactgtgaaggacaaccaggtagta
cagcttcacccgtccaccgtcctcgaccacaagccggagtgggtgctctacaatgagttt
gtgctcaccaccaagaactacatcaggactgtcacggatatcaagccagagtggttgatc
aagatcgcgccccagtactacgacatgtccaacttccccaactgcgaggcccgacggatg
ctggagaggatcattgccaagctggagagcaagcagtaccaagaaggcttttga
DBGET
integrated database retrieval system
