Haliotis rufescens (red abalone): 124116283
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Entry
124116283 CDS
T07893
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124116283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrf03019
]
124116283
Messenger RNA biogenesis [BR:
hrf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124116283
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124116283
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Not1
CNOT1_CAF1_bind
NOT1_connector
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Motif
Other DBs
NCBI-GeneID:
124116283
NCBI-ProteinID:
XP_046333503
LinkDB
All DBs
Position
Unknown
AA seq
2676 aa
AA seq
DB search
MNLDSLSFALAEISYSVANLTKKNFKANVSEISHLVAQHGAEADRHLFRCLFSHVDFSGD
GKSSGKDFHQFPFQTQFLIQECGSLFSKSNFVSTLCYAIDNPLHHQKSLKPTSQLFPQLS
KVLRLSRVQEVVFGLALLNSVSPDSRTYATQYIKQKLPDLLRSYVDADVTSRQEGGLQDV
CIEVLHLLLTHLERGKDHFGIGNEQKEAFLKTLRRDFPRERAPAVLAPLLFPSTEDIPIE
KLADTHSMPKSMMDASLADMILEAGYSCTSTVEECRNHLMQFGFRELTPTSVARVLGMMA
HTPTGLGESQPAPTSVAVGSGWSDKDRIDTPGVTTWNVEIFVQVVKDLAPLLNWKEVVSQ
LDHKGFYVNNKKGLKLLMEGLFRGLQDIFPVEYIFKPWSNTEGQLSYIIQSLRNPDVFSF
ADYPGDTVVIDILKSTPNDEDREVATWKSLNLVESLLRLAEAGHYQAVWDLFKYPSQKCP
DMLVLALLQTTPTWNTIKQELIATLMPIFLGSHANSAVVLHYAWHHQGHSSTIRTLIMHS
MAEWYMRGEPHDQTRLSRILDVAQDLKALSMLLNATPFAFVIDLACLASRREYLKLDKWL
TDKIGEHKMVSFQEPFIQACVTFLKRRCPQLVGAPVKEELPQMKSQQLPPDTIATMLTCL
KTWANQVSQELSESIATMFTNASLILNRNRQAPPGVVGPKQPQQQPPTNFPPSGMVNPMD
PLANIGNVLAPPTQSAVGSGASSAFPTSGITSAFPTTGASSAFPSSGSTAFPSTGLSAGF
PTSVGSSVFPTSVGSSAFPTSVGSSAFPTSVGSSAFPTSVGSSAFPTSVGSSAFPTSVGS
SAFPTSGGSSAFPTSVGSSAFPSSVGSSAFPTSVGSSVFPSSGSTPFPSSGSTPFPSSGS
TPFPSSGSTPFPSSGSTPFPSSGSTPFPSSGSTPFPSSGSTPFPSSGSTPFPSSGSTPFP
SSGSTPFPSSGSTPFPSSGSTPFPSGSTPFPSGSTPFPAGGSSGFPQSLAGSVAPGSPSK
GFSGISQQNNTAFNPIQSLSSQFQNLGFQTPISTAMGPPRNPVNSLANLSAQVAVKQGAS
SADRISTRPTGTGPPGDMSTIFPEMTQQFSKEVEDKANSYFQQIYNQPPHPTMSIDEVLE
MLKRFKDSQNKIERDVFACMLRNLFEEYRFFPQYPERELHTTAVLFGGIIEQGIVTYWTL
GIALRYILEALRKPYGSKMYYFGIAALDRFKTRLKDYPQYCQHLAAIQHFQQFPQHLIEF
VDFGARSLEPPPMAQTSGTLTPTMGGTPVPVQPANNPVARTTEGAVSGGGAATAVVTSAG
AGSGTTTVNTTSTRPTPGPAFSKPSIATATNIDTLLAGQGKEEIAVPPESLQDKVFFIFN
NLSLANMQPKGEELKEQVGEEYMPWCSQYLVMKRASIEPNFHTLYSSFIDVLQIPNMTQT
VIKETFRNIKVLLRSDKGVANFSDRTLLKNLGHWLGMLTLGKNKPILQIDIDVKALLYEA
YQKGAQELLYVVPFSAKVLESCSKSKVFRPPNPWTMAIMNVLAELHMEPDLKLNLKFEIE
VLCKTLGLDINELKPTNYLKDPMRLPTIECQLSAPKPQIGTPLPPAEESVVPSLTSMSIP
PPIVTSVTTMSTPTSTAPVSTPNLPPQPTYSFHDVNASSFTGLAQHIIINDQIALLHQNP
QLKQYVRPAIERSVQELLPPVVERSIKIALTTCEQIVRKDFALDPEEMRMRSAAHYMVRN
ITAGLALITCREPLFISINNNLKNAFMATLRGATQAQKTLIEEAATLVAQDNAELACAFI
QKTAVERAIPEMDKRLATEFDLRKHARSEGRRYCDPIVLPYQAERMPDQIRLKVGGVTPQ
QIAVYDEFARNIPGFLPLTDATFPPGISKPTPSYAPDEITMIYEKIARDIEQHLQQMMGI
PAGSPMGSQLHSLLEAVLLARNSREIVTAIALLQKAVEGLLDQYSMNSLTNTDQEMLLRF
RECHLVVLKGLQDARAYGPQWVNKEVTRCLIQCRDEFKYNIDAVDCLIRSGLVNLQQYDV
YLSQLMENGLNHVAVSFSMQLVQRFCIDDKHNSSVSEADFYNTIEALGAIASRSRQHPEG
LSTLIEIIRQNSDGGLLDRTPGGPTSMMQSGISQAREFDDPPGLNEKTEYLLREWVNMYH
SPAAGRDSTKAFSAFVQQVMHQQGILKTDDLITRFFRLCTEMCVDLCYRALSEQTHTSPT
LIRAKCFHTLDAFVRLIALLVKHSGDTTNTVTKINLLNKVLGIVAGVLLQDHEVRYTEFQ
QLPYHRIFIMLFIELNAPEPILESINFQVLAAFCHVFHILRPGKAPGFAYAWLELVSHRV
FIGRLLALTPQQRGWGMYAQLLIDLFRFLSPFLRNAELTKPTQLLYRGTLRVLLVLLHDF
PEFLCDYHYAFCDVIPPNCIQMRNLILSAFPRNMRLPDPFTPNLKVDTLPDITHPPRILT
NFVNMIQPASFKKDLDSYLKTRTPISFLSELRSSLQSNEPGCHYNIPLINALVLYVGTQA
IQFIHTKGQTPAISTIAPSSHMDIFQNLAVNLDTEGRYLFLTAIANQLRYPNSHTHYFSC
TLLYLFVQANNEQIQEQITRVLLERLIVNRPHPWGLLITFIELIKNSTFKFWSHEFVHCA
PEIDNLSCRLFESVARSCMQPKQTGNSREPETAEVH
NT seq
8031 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggactcactttcatttgcgttggcagaaatcagttattcagttgccaatcta
acaaagaaaaatttcaaagcaaacgtttctgagatatcacatcttgtcgcccagcacgga
gcggaggctgataggcatctgttccggtgcctcttctctcacgttgatttcagtggtgat
ggtaaaagtagcggcaaggactttcaccagtttcctttccagactcagtttctgattcaa
gagtgtgggtcactttttagtaaatccaactttgtgtcaacattgtgctacgccatcgac
aatcctctacaccaccaaaagagtttaaaacccacttcgcagctgtttccccagctgagt
aaggtgttgaggctctcgcgtgtacaggaggttgtatttggcttggctcttctaaactct
gtgagccctgattcccgcacctacgccacacagtacatcaagcaaaagcttcctgactta
ctccggtcatacgtggatgcagacgtcactagtcgacaggagggtgggcttcaggacgtc
tgcattgaagtactccacctgctactgacacacttagagcggggaaaagatcactttggt
attggcaacgaacagaaggaggcgttcctgaaaacactcagaagagattttccccgcgaa
cgagcaccggcagttcttgctcccttactgttccccagcacagaagacatacccatagag
aaacttgcagatacacacagcatgcccaagtcaatgatggatgcctctctggcagacatg
atactagaagctggatacagctgtacctccactgttgaagaatgccggaaccatctgatg
cagtttggtttccgagagttgacgcctacctcggttgcccgtgtcctggggatgatggcc
cacacacccacaggccttggagagtcacagccagcaccgacctcagtggctgttggcagt
ggatggtcagacaaagacagaatagacacaccaggagtaacaacatggaatgtagaaatc
tttgtgcaggttgtgaaggatcttgcaccactcctgaactggaaggaggtggttagtcag
ctggatcacaaaggtttctatgtgaacaacaagaaaggcctgaagctgctgatggaaggc
ttgttccgaggcctacaagacatcttcccagtggaatacatcttcaagccatggagtaat
acagagggacagctatcatatatcatacagtcattgcgaaacccggatgtctttagtttt
gctgactacccaggtgatacagtggtcattgacatcctcaaatctacacccaatgatgaa
gacagagaggttgctacttggaaatccttgaacctggttgagtcattactgcgtctggca
gaggcgggacactaccaggcagtgtgggatctgttcaagtacccttcccagaagtgtcct
gatatgctagtccttgcccttctgcaaacaacacccacatggaacactatcaaacaagaa
ctgattgcaacacttatgccaatattcttgggcagccatgcaaattcagctgtggtcctc
cattatgcttggcatcatcagggacactccagtacaatcaggacgttgataatgcactcc
atggcagaatggtacatgaggggagagcctcatgatcagactcgattgtcacgtattttg
gatgttgctcaagatctaaaggctctctccatgcttctcaatgctacaccttttgcattt
gtgattgaccttgcatgcctcgcctccagacgagagtatctcaaactggacaagtggttg
acagacaagatcggagaacacaagatggtttcattccaggaacctttcatccaagcctgc
gtcacgttcctcaagagacgatgtcctcagctggttggagctccggtgaaggaagaactg
ccacagatgaagagccaacagttgccgccagacactattgcaactatgcttacttgcctc
aagacttgggcgaaccaagtgtcccaagagttatcggaatccatcgcaacgatgttcacc
aatgctagtttgattctcaaccgcaacagacaagccccacccggtgtagttgggccgaag
cagccacagcaacagccgccaacaaacttccctccttcaggcatggttaatcctatggat
ccccttgctaacattggcaatgttctggcaccacccacacagtcagcagtaggctctggg
gcctcctcggccttccctacaagtgggatcacatcagccttcccaactactggtgcatcg
tcagcttttccatccagcggatccacagcattcccatctacaggactatcagctggcttt
cccacaagtgttggctcatctgtctttcctactagtgttggttcatctgctttccctacg
agtgttggctcctcggctttccccacaagcgttggttcctcagctttccccacaagtgtt
gggtcatctgccttccctacaagtgttgggtcatctgccttcccgacaagcgttggctct
tcagccttcccaacaagtggtggctcctcagctttccctaccagtgttggatcgtctgcc
ttcccaagtagtgttgggtcatcagcctttcccacaagtgttggatcatctgttttccca
tcaagtggatcaacaccatttccatcaagtgggtccacacctttcccctctagcggatcc
acacctttcccctctagtgggtcaacacctttcccctctagtggatcaacacctttcccc
tctagtggatcaacacctttcccctctagtggatcaacacctttcccctctagtggatca
acacctttcccctccagtggatcaacgccatttccatcaagtgggtcaacacctttcccc
tccagtggatcaacgccatttccatcaagtgggtcaacaccatttccatcaagtgggtca
actccatttccgtcgggatcgacgccgtttccgtcggggtccacaccatttcctgcaggt
ggatcttcaggctttcctcagtcactggctggatctgttgcaccaggctctccttccaaa
ggcttctctggaatctcacaacagaataacacagcattcaaccccattcagtcattgtcg
tcccagtttcaaaatctaggtttccagaccccaatatcgacagccatgggtcccccgagg
aacccagtgaactcccttgccaatctgagtgcccaggtggctgtgaaacaaggggcatcc
tccgccgacaggatcagcacaaggcccactggaacgggccccccaggggacatgtccacc
atcttccctgagatgacccagcagttcagcaaggaagtggaggacaaggccaactcatac
ttccagcagatctacaaccagcctccgcaccccacaatgtccatagatgaagtgctggag
atgctgaagagattcaaggactcacagaacaagattgaaagggatgtgtttgcgtgcatg
ttgcggaacctgtttgaggagtaccgcttcttcccccagtacccagagagggagcttcac
accacagcagtactctttgggggcattattgaacagggtattgtcacatactggaccctt
ggtattgcactgaggtatattctggaggcactgagaaaaccatatgggagcaagatgtat
tattttggaattgctgctctagaccgattcaaaacaagactaaaggactacccccagtac
tgtcagcacctggcagcaatacagcacttccagcagtttccccagcatctcattgagttt
gttgactttggtgcccggtccctggaacctcctccaatggcacaaacttcaggcaccctc
accccaacaatgggaggaacgcctgtcccagtacagccagccaataaccctgttgccagg
accacagaaggagctgtgtctgggggaggggctgctaccgctgtggtgacaagcgcgggg
gcggggtctggaacaactacggtcaacaccaccagtaccagaccgacaccaggacctgcg
ttttccaagccctccatcgctactgccaccaacattgataccctgctggcgggacagggg
aaggaggagatagctgtgccgcccgagtcacttcaagacaaggtcttcttcatctttaac
aatctgtccctggcaaatatgcaaccaaagggcgaggagctgaaagagcaagtgggagag
gagtatatgccatggtgttcccagtacctggtcatgaaaagagccagcattgaacccaac
ttccacacactctactccagcttcatcgacgtcctgcagatacccaacatgacacagact
gtcatcaaggaaactttcaggaacatcaaggttctgttaaggagcgacaagggtgttgct
aacttttcagaccgaacgttgctgaaaaatctgggtcactggttgggaatgctcacacta
ggaaagaacaaacccatcttacagattgatattgatgtgaaagccctgttgtatgaagct
taccagaagggtgcgcaggagttactctacgttgtccccttcagtgctaaagtgctagag
tcgtgctccaagagcaaggtgttccgcccacccaatccctggaccatggccatcatgaac
gtgctagctgagctccacatggagccagacctcaaactcaacctcaagtttgaaatagaa
gtgctatgtaaaacactgggacttgatatcaatgaactgaagcccaccaattatttaaaa
gatccaatgcgactcccaacaatcgagtgccagctatctgcacccaagccccagatcggt
acgccactcccaccggcggaagagtctgtcgtgcctagcctcacatctatgtctatccct
ccacccattgtgacatctgtaacaaccatgtctacacctacgtccactgcaccagtatcg
acaccaaacctgccgccacaaccaacatacagtttccatgatgtcaatgcgtcatcattt
acaggcctggctcagcacatcattatcaatgatcagattgctctgttgcaccagaacccg
cagctgaagcagtatgtgaggcccgccatcgagaggtctgtgcaggagctactgccaccc
gtggtggagagatccatcaagatagcgctaaccacatgtgaacagattgtcaggaaggac
tttgccctggaccccgaggagatgcggatgaggtcggcggcacactacatggtgcgcaac
atcactgccggactggccctcatcacatgcagggagcccctcttcatcagtattaacaac
aacctcaagaatgctttcatggccacactcagaggtgccacccaagctcagaagaccctg
attgaagaagccgccacccttgtggcccaggacaatgctgaactggcctgtgccttcata
cagaagactgcagtggagagggccatcccagagatggataagagactcgctactgagttt
gatttgaggaaacatgccagatccgagggaagaaggtactgtgatcctatagttctgccc
taccaagctgagagaatgccggatcagattcgactcaaggtgggaggagtgacgccccag
cagattgccgtctatgacgagtttgccaggaacatccctggcttcctgcccctcactgat
gccacattcccccccggaatctcaaaacctacaccatcttatgcacctgatgagatcact
atgatctatgagaagattgcccgggacattgagcagcatctgcagcagatgatgggtatc
ccagctggcagccccatggggtcccagcttcacagtctgctggaggctgtcctccttgcc
aggaactccagagagattgttacagctatagctttacttcagaaggccgtggagggtttg
ctggaccagtactccatgaactccttgaccaataccgaccaggagatgctgctccgattc
agggagtgccatcttgtggtgctgaaaggactacaggatgcccgggcgtatgggccacag
tgggtcaacaaggaggtcacaagatgcttgatccagtgccgtgacgagttcaagtacaac
atagatgcagtggactgcctcatccgcagcggcctggtcaacctgcagcagtacgacgtg
tacctgtcccagctgatggagaacggactcaaccacgtggccgtctccttctccatgcag
ctggtccagcgcttctgtatcgatgacaagcacaacagctccgtcagtgaggctgatttc
tacaatacaatagaagctcttggtgccattgcgtcccgatcaagacaacacccagaaggc
ctctcaacactgattgagattatccgtcagaacagtgatggaggactcctcgatcgaaca
ccaggtggccccacatccatgatgcagtcaggaatctcccaagcgcgagagtttgacgac
cccccaggcctgaacgagaaaacagagtatttgctgagggagtgggtcaacatgtaccac
tcccctgcagctgggcgggacagcacaaaggccttttctgcttttgttcagcaggtgatg
caccagcaaggcatcctgaagacagatgatctgatcacccgcttcttccgcctgtgtacc
gagatgtgtgttgacctgtgttaccgggctctcagcgagcagacccacacaagccctaca
ctcatcagagccaagtgtttccacacactggatgcgtttgtccgactcattgcgctgctg
gtgaaacactcgggggatacgaccaacacggtcaccaagatcaacctactcaacaaggta
ctgggaatagtagctggtgtgctgcttcaggaccatgaagtccggtacacggagttccag
cagctgccttatcaccgcatctttatcatgctcttcattgagttgaatgcaccagaaccc
atcctagagagcatcaactttcaagtgttggcagcattttgccatgtgttccacatcttg
aggcctgggaaagcccctggatttgcgtatgcctggttagagctggtctctcaccgtgtc
ttcatcggtcggcttctggccctcacacctcaacagaggggctggggaatgtatgctcaa
ctgttgattgacctgttccgcttcctctctcccttcttgaggaatgctgaactgacaaag
ccgacacagctgttgtacaggggaacattacgagtcctgttggtcctgctgcatgatttc
ccagaattcctctgtgattatcactatgcattctgtgacgtcatcccacccaactgcatt
cagatgcgcaacctcattcttagtgctttcccccgcaacatgcggctgccagaccccttc
acccccaacctgaaggtggacaccctgcctgacatcacacatccccctcgcatcctcacc
aacttcgtcaacatgattcagccagcttcattcaaaaaggacttggactcttatttgaag
acaaggactcccatatccttcttgtctgaactgaggagcagtctacagtccaatgagcca
ggctgccactacaacatccccctgatcaatgcactggtcctgtatgtgggcacgcaggcc
atccagttcatacacaccaagggacagacaccggctataagcaccatagctccttcatca
cacatggacatctttcagaatctcgccgtcaaccttgatacagaaggtcggtacctgttc
ctgacagcgatagccaaccagctgcgctatcccaacagtcatactcactacttcagctgc
acgctgctctacctgtttgtgcaggccaacaatgagcagatccaggaacaaatcacaaga
gtgctacttgaacgtctgattgtcaaccggcctcacccatggggtcttctcatcacattc
attgagctcatcaaaaactccacattcaagttctggagtcatgagtttgtccactgtgca
ccggagattgacaatctttcttgcaggcttttcgagtctgtggctcgatcctgtatgcag
ccaaaacagaccggcaactcacgggaaccggagacagctgaggttcactag
DBGET
integrated database retrieval system
