Haliotis rufescens (red abalone): 124120414
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Entry
124120414 CDS
T07893
Name
(RefSeq) vam6/Vps39-like protein isoform X1
KO
K20183
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf04140
Autophagy - animal
hrf04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
124120414
04148 Efferocytosis
124120414
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hrf04131
]
124120414
Membrane trafficking [BR:
hrf04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
124120414
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Vps39_1
CNH
zf-Vps39_C
Clathrin
TPR_Vps41
Beta-prop_DCAF12
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
124120414
NCBI-ProteinID:
XP_048258902
LinkDB
All DBs
Position
Unknown
AA seq
883 aa
AA seq
DB search
MHDAYEAAPILEKLPLQIESIACYDDILLVGTKQGHLLQYKIKRSTRVQEKKFEVTLERS
NKSFSKKPITQLAAIPEHYILISLSDNVISVHDLQSFGLVTCVSKTKGATLFATDVQKAP
SITGGEQTTLRIGVSSKRRVQLFYWKNRDFYELLADLSLYDVPRAMAWCKESLCVGFRRE
YYMISVKNGELTELFPVGSRQVEPIVTRLANDRLALGRDEMSILIDAEGKPARKEPVKWS
DIPLAIEHNPPYVLAILPKYVEVRTVDPNLNIQSIELSKPRLVCQGSNTVYVASSNFVWR
LAPTPISHQIKQLLQGKEFKLALHLADMQDEPESEKEKRIRNINNLYAFDLFCQHKFEES
MKIFDSLGTDPSHVIGLYPNLLPQDFRNQLEYPDRLPDLEGGELEKGLLALIDYLTDKRN
QLLKDLNKDMATTAIVEGNVTIRSKKQLSQIIDTTLLKCYLQTNDALVAPLLRLKDNNCH
VEESERVLKKKEKFSELIILYEKKGLNQKALNLLMKQAARPDSPLKGHDRTVQYLQHLGA
EHLALIFEYSEWVLRKHPEDGLKIFTEDTPEIESLPRDEVLEFLERTGKDLAIPYLEHII
SQCDDETPEFHNRLVHLYREKIQTLAEDYVESLPEAGDRLDKSKDEPAELEEYRVKLVVF
LQTSQHYVPEMLLARFPLDKFYEERAILLGRLGRHEQALGIYIHILKDPRLAEVYCRTHF
DKDKEGNKDVYVCLLKMFLQPPEPSTLGLAPGGVVSTPHKNIPAALKLLEDHAWKIETTK
ALELLPPETRVRDILTYLENVMEHRAAQRRSDQVLKSMLYNENLQVQEQRMYYQKVKVII
NDEKTCRVCRRRIGDSAFARYPNGLIVHYFCCKDPKTLPPDLK
NT seq
2652 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgcttacgaggcagctccaattctggagaaactccctctccaaattgaatca
atagcatgttatgatgacattttgctggtgggaacgaagcaagggcacctgctgcagtac
aagatcaagaggagtacaagggtgcaagaaaagaaatttgaggtaaccttggagagatca
aacaagtccttctccaagaaaccaatcacacagcttgctgctattcctgagcactacatt
ctgatcagtctctcagacaatgtaatcagcgttcatgaccttcagtcctttggcctcgtc
acctgtgtcagtaagacgaagggggctacgctgtttgccacagatgtacagaaagctccg
tccatcaccggtggggagcagaccactctcaggataggtgtgtcctccaagagaagagtg
cagttgttttattggaagaatagagacttctatgaattgctggcagacctgagtctgtat
gatgttccgcgagcgatggcctggtgtaaggagtctctgtgtgtgggattccgtcgagag
tactacatgatcagtgttaaaaatggtgagctgacggaactgttccccgtagggagtcgc
caggtggaacccattgtcaccagactagccaatgaccgcctggcactcggccgagacgag
atgtctattttgatagatgctgagggcaaacctgctcggaaggagccggtgaagtggtcc
gacattcccttagctatagaacataatccaccctatgtgctagccatcttacccaagtat
gtggaagtccgaactgttgaccccaacctgaatatccagagtatagagctctccaagcct
agacttgtgtgtcaggggagtaacactgtatatgtagcttcgtccaactttgtgtggaga
ctggcccccacacccatctctcaccagattaaacagctgcttcagggaaaggagttcaaa
ctggctcttcacttagctgacatgcaagatgagcccgagtctgagaaggagaagaggatc
aggaacatcaacaacctgtacgccttcgacctgttctgtcagcacaagtttgaggagtcc
atgaagatatttgactctctcgggacagatccgtctcatgtgattgggttataccccaac
ctgctgccccaggacttccggaaccagctggagtatcctgaccgactgccggacctggag
ggtggggagctggagaaaggactgcttgcactcattgattatctcactgataagagaaac
cagttactcaaggacctgaacaaggacatggcaacaacggccattgtcgagggcaacgtc
accatccgctccaagaagcagctgagccagatcatagacacaacactccttaaatgctac
ctccagacaaatgatgcgctggtggccccgctgctgagactgaaggacaacaactgccac
gtggaggagagcgaacgggtgctcaagaagaaggagaagttcagtgagctcatcatcctg
tatgagaagaaaggtctcaatcaaaaagccctgaacctattgatgaagcaggcagctcgg
cctgactctcccctcaaaggccatgaccggacagtccagtacctgcagcatctaggtgct
gaacatctggctttgatatttgagtattctgagtgggtgctgaggaaacacccggaggat
gggctgaagatatttactgaggatacacctgagattgaaagtcttccgagagatgaggtg
ctagagtttctagagaggacggggaaagatctggctattccttatcttgaacatataatt
tctcaatgtgatgacgagacaccagagttccacaaccgcctagtgcacctgtaccgagag
aagatccagacactagctgaggattatgtcgagtctctccctgaagcaggagatcgtctc
gacaaatcaaaagacgagccggcagagttggaggagtacagggtgaagctggtggtgttc
ctgcagacgtcccagcactacgttcccgagatgctgctggccaggttcccgctagataag
ttctacgaggagagagcaatcctactgggccgcctggggagacacgaacaggctctgggc
atctacatccacatcctcaaggacccccgtctggctgaagtttattgtcggacacacttc
gataaggacaaggaaggaaacaaagatgtgtacgtgtgcctgctgaagatgttcctccag
cctccggaaccctccacgctcgggctggccccaggcggagttgtcagcacaccccataag
aacatccctgctgccctcaaactcctggaggaccatgcttggaagattgagacgactaag
gctctggagctgttgcccccggagacccgagtccgagacatcctgacttacctggagaac
gtgatggagcatcgagcagctcagcggcgctcagaccaggtgctcaagagcatgctctac
aatgaaaacctacaggtccaagaacagcgtatgtactaccagaaggtcaaggtcatcatc
aatgatgagaaaacatgtcgcgtttgtaggaggaggattggagacagtgccttcgctcgc
tacccaaatggcctgatcgtccactacttctgttgcaaagacccaaagacgttgccgcca
gatctcaagtga
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