Haliotis rufescens (red abalone): 124127358
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Entry
124127358 CDS
T07893
Name
(RefSeq) nuclear exosome regulator NRDE2-like
KO
K26109
nuclear exosome regulator NRDE2
Organism
hrf
Haliotis rufescens (red abalone)
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrf03019
]
124127358
Messenger RNA biogenesis [BR:
hrf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124127358
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
TPR_15
Motif
Other DBs
NCBI-GeneID:
124127358
NCBI-ProteinID:
XP_046346712
LinkDB
All DBs
Position
Unknown
AA seq
1160 aa
AA seq
DB search
MDVGETFQDDFKTPSSSQTLFPLSSTSIKELEKHTLFPVGSEPTALPNEDTGGGGLDWLS
NPSYGDAAVASVVELQEAIAEHHAASVQSENRCSNAARETSEGGSDDKESQGTADPGDEG
PARHSRQKAKHKHKHKKNKVKKKELAVSSRVGSQLSEKVTVSTKKVFIEEMSGLEPEDAF
RIDRKRDKDLWTYECLFKAHIAGYRRLGHSALGLQGNLDLFKHEKNSSKKAEAVRYCQKR
SRALLRKVGEKVRHVDREAGQVQYIPLGGVTDTATDPLRVLDEATRQYVQGRGTEEAGET
EETQLDDEILQQVARYNKNLRENTSDVKLWLEFVKFQDQVFRGDSWRRGGLSQAVIDKKL
AILERALSDNPGCLDLKLAQLEVCEDVWGTERLAQEWDQLLFVHSANTKLWHSYLLYQQS
RLTSFSVPKLIKLYHKCFRVLTAVVEGNMQTARPTDVPDSALMDVFVQYCMFLHQVGHTE
RAVASYQAIIEFNLFCPPNLTDTMTGDRAAVFESFWDSSIARFGEPGAAGWGAWRSRDKM
VAETGGVTADPTEEAEEAIISKQMPTWKTWLEIETLRENSHWLPWRPDLSKNETEEDCED
LERLVLVDDITPVLFRVAEPEAQFRLVLCLLRQLGVATWDVLSQLCLQQQEGTSASSMQL
SLHKMCQLPWLPAARSPDLEGADDQSETLQRFIHQTLAQAVRVFRGQSQTVFTLLLIQTE
WRKHGVDSPRDLPKHKSKVLRKFVKNLLKEGHNRNNLTVWNAYACLEHELGRNQDAVGVV
ETALAMFSGGSSEDKSGLCLLYQTYCQLLLHVTQHLHADLTQKQIDVSQQQKTRLMFCLT
SLAEGTKFQLLKEPPLTTSTMLRTRRKLKTQVTDLARTLCKAESAHGEGNTRVFHHLLSQ
LNCLAMFELCSSGLEAAMSNYQDVLLLLDGSKSSAPSQPLVAVRENIYRSQWILLRHQMS
VGAVPLSQLRVVIDRALQEFPDSSAFLQCLVDLEARSHIVGRLRRYMDRALVNPASPVPL
LHTVLVEVVRLTSLQQVAQTDSYSTTGVMHRVRSVLERGTQSSASQHCPLVWRLYSHVES
KFGDRERAKGIFYRALQQCPWSKVLYKDGVRLFGQSQLQEMVDLMTEKELRVQIPVEELD
LLCQSDPVPHSPQEEEMVEV
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggacgtcggggaaacatttcaagatgacttcaagacaccctcgtcatctcagactctg
ttcccactgtcgagtacaagtataaaggaacttgaaaaacatacactatttcccgtgggc
agtgaacctaccgcccttcccaatgaagacacgggagggggaggcctggactggctcagc
aacccgagttacggagatgcagctgtggcgtcggtcgtggagctgcaggaagccattgca
gagcaccatgccgccagtgtccagtcagaaaacagatgttccaatgcagcaagagagaca
agtgaaggaggtagcgatgacaaggagtctcaaggtacggccgacccaggtgacgagggt
ccagcccgccacagcaggcaaaaagccaaacataaacacaagcataagaaaaacaaagtc
aagaaaaaagaacttgcggtatcttcaagagtaggatcccagttgtcagagaaggtgaca
gtcagcaccaagaaggtgttcatagaggagatgtctggtctggagcccgaggatgctttc
aggatagaccgcaaacgtgacaaggatctgtggacatacgagtgcctcttcaaggctcac
atagctggctacaggagactcggacactctgcactcgggctgcaggggaacctggatctt
tttaaacatgagaaaaactcaagtaagaaagccgaggcagttaggtattgccagaagaga
agcagagcactgctgaggaaggtgggagagaaggtgaggcatgtcgatcgggaggccggt
caggttcagtacattccccttggcggggtgacagacactgctactgaccctctccgggtg
ttggacgaagccaccaggcagtacgtccaggggaggggcacggaggaggctggtgagacg
gaagagacacagctcgatgatgagattctccagcaggtggccaggtacaacaagaacctc
agggaaaatacaagcgatgtaaaactctggctggagtttgtgaagttccaggaccaagtg
ttccgtggggattcctggcggaggggagggctgtcccaggcagtgattgacaagaagctg
gccatcctggagagggcgctgtcggacaaccctggctgcctggacctgaagctggcgcag
ctggaggtgtgcgaggatgtgtggggcacggagcgactggcgcaggagtgggaccagctg
ctgtttgttcactccgccaacaccaagttgtggcacagctatctcctgtatcagcagtcc
agactcacatccttctccgtccctaaactcatcaagctctaccacaagtgtttccgcgtg
ctgacagcggttgtggaggggaacatgcagacagcccggccgacagatgtgccagactcg
gccctcatggacgtgtttgtccagtactgtatgttcctgcatcaagtgggtcacaccgag
cgagccgtggcctcgtaccaggccatcatcgagttcaacctcttctgtccccccaacctc
acggacaccatgacgggggaccgggcggccgtgtttgagagtttctgggacagcagcatt
gctcggtttggggagccaggagcggcaggctggggcgcctggaggagcagggacaagatg
gtggcagagacggggggcgtcacggcagacccgactgaagaagctgaggaagctatcata
tcaaaacagatgccgacatggaaaacttggttagaaattgagacattacgtgaaaactcc
cattggctgccatggcgaccagatctgtcaaagaatgaaacggaggaagactgtgaggat
ctggagcgactggttctggtagacgacatcacaccagtgttgttccgagtagcggagcca
gaagctcagttccgccttgtcctgtgtctgctccgccagctgggcgtggccacgtgggac
gtcctgtctcagctgtgtctgcagcaacaggaggggacctcagcatcttccatgcagctg
tccctccacaagatgtgccagttgccatggttaccagctgcaaggagccccgacctggag
ggagctgacgaccagagtgagacgttacagagatttattcaccagaccctcgcccaggca
gtcagagtgttccggggacagagtcagacggtcttcacgctgcttctgattcagactgaa
tggaggaaacacggagttgattctccaagagacttgcctaaacacaaatcgaaggtgctc
agaaagtttgtgaaaaatctgctaaaggaaggtcacaaccgcaataacctgactgtgtgg
aacgcgtacgcctgcctggagcacgagctggggaggaaccaggacgccgtgggggtggtg
gagacagctctagcaatgttcagtgggggcagcagtgaggacaagtccggcctgtgtctc
ctgtaccagacctactgccagctcctcctccatgtcacacagcacctccatgcagacctc
acacaaaagcagatagacgtgtcacaacaacagaagacaaggctcatgttctgcctcact
tctctagctgaaggtacaaagttccaacttctgaaggagccgcctttgactacaagcact
atgttgagaacacggcgcaagctgaagactcaggtcacggatcttgccaggacactctgc
aaagcagagtccgctcacggtgaaggtaacaccagagttttccatcaccttctgagtcaa
ctgaactgtctggccatgtttgaactgtgttccagtggcctcgaggctgccatgtctaac
taccaagatgtccttctgttattggatggcagcaagtcttcagccccgagccaacctctc
gtggccgtccgggagaatatctacaggtcgcagtggatcctgctccgccaccaaatgtca
gtcggggcagtgcctctcagccagctgcgggttgtgatagacagagccctgcaggagttc
cccgacagctcagccttcctccagtgcctggtggacctcgaggccaggtcccacatcgta
gggcgtctgcggcgctacatggacagagctttagtgaatcctgcatctcctgtaccactc
ctccatactgtgctggttgaagtagtgagactcacctctctacagcaggtggcacaaaca
gacagttacagtaccactggcgtgatgcaccgagtgcggagtgtgttggagcgcgggaca
cagagctcggcctcacaacactgccccctggtgtggaggctgtacagccatgtagagagc
aaatttggggacagagagcgagctaaaggaatattctacagagccctgcagcagtgtcct
tggtccaaggtgctgtacaaggatggggtgcgtctgtttggccagagtcagctgcaggag
atggtcgacctcatgacagagaaggagctacgtgttcagatcccagtggaggaactagat
ctgttgtgtcagtctgaccctgttcctcacagtccacaggaggaggagatggttgaagtc
tga
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