Haliotis rufescens (red abalone): 124131366
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Entry
124131366 CDS
T07893
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03013
Nucleocytoplasmic transport
hrf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124131366
03015 mRNA surveillance pathway
124131366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrf03019
]
124131366
Enzymes [BR:
hrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124131366
5.6.2.5 RNA 5'-3' helicase
124131366
Messenger RNA biogenesis [BR:
hrf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124131366
mRNA cycle factors
Common to processing body (P body) and stress granule
124131366
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
Viral_helicase1
DEAD
nSTAND3
NPHP3_N
ATPase
Helicase_RecD
UvrD-helicase
SRP54
AAA_16
AAA_5
AAA_22
AAA_32
Motif
Other DBs
NCBI-GeneID:
124131366
NCBI-ProteinID:
XP_046350559
LinkDB
All DBs
Position
Unknown
AA seq
1114 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEETDLLGADTQGSDFDFTDFTLPSQTQSQTQASQLDGGQSQS
QGQVNGIDGPLQNGIDGGITGITQGVGELNFEEEEEEQFYMKDLPKYACAYCGIHDPACV
VFCNTTKKWFCNGRGNTSGSHIINHLVRAKAKEVTLHKDGPLGETVLECYNCGCRNVFLL
GFIPAKADSVVVLLCRHPCATLSNLKDMNWDPSQWQPLIQDRQFLSWLVKVPSDQDQMRA
RQISAQQINKLEELWKENPDAKLEDLEKPGVDEEPQQVLLRYDDAYQYQNIFGPLVKHEA
DYDKKLKESQTQDNIVARWDVGLNKKRIAYFHMSSANDEMKLMHGDELRLRYIGELHKPW
SGVGHVIKIPDNYSDEVAIELKSNAGVPTECTHNFVVDFVWKSTSFDRMQAALKTFAVDE
TSVWGYIYHKLLGHEVEDVVLKCQLPKRFSAPGLPELNHSQVYAVKTVLQRPTSLIQGPP
GTGKTVTSATIVYHLVKQNNGPVLVCAPSNIAVDQLTEKIHRTGLKVVRLCAKSREAIDS
PVSFLALHNQIRNMESVPELQKLQQLKDETGELSSQDEKRYRALKKQCEKELLQAADVIC
CTCVGAGDPRLAKMQFRSVLIDESTQATEPECMIPVILGCRQLILVGDHCQLGPVVMCKK
AARAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAAERSRKN
LDFPYPQPDKPMFFYCTSGQEEISSSGTSYLNRTEAANVEKLTTRFLRSGIKPEQIGIIT
PYEGQRAYLVQYMQYSGALNKKLYQEIEVASVDAFQGREKDFIVLSCVRSNEHQGIGFLN
DPRRLNVALTRARYGIIIVGNPKVLSKQTLWNHLLTYFKEQKCLVEGPLNNLKESLIQFS
KPRKLVNTANPGGRFMSNTMFDAREVLIPGSIYDRSVGYREPVVRTHDQLSFIGPERAYT
GAALSLPVPVNMFLPQVPQHFQAQPMPQAGNKSMQPPRRMGQNQNQGRRQKPPRYSNMQQ
NISQFNLSGSQSQASQDASQSFSQGPLTQGHLSMSQPFQMSQPGLSGLSQAELSQDSFLA
EDFKSQADGMLSQDSTYQGDRMFYASQLSQGPFN
NT seq
3345 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtagatgcgtatgggccaagctcgcaaactttgactttcctggataccgaagaa
accgaccttctgggcgcagatacacaaggatccgacttcgactttacagattttaccctt
ccatcccagacccagtctcaaactcaagcctctcagcttgatggggggcaaagtcagagc
caaggccaggtgaatggtattgatggcccgctgcagaatgggattgatggaggaatcacg
ggcatcacccagggcgtgggggagctcaactttgaggaggaagaagaggaacagttttat
atgaaagatctcccaaaatatgcatgcgcttattgtggaattcatgacccagcctgtgtg
gtgttctgcaacacaacgaagaagtggttctgtaatggccgtggcaatacatcaggcagc
cacatcatcaaccatctggtccgagcaaaggcaaaggaagtgacccttcacaaggatggc
cctctcggagagacagtgcttgagtgttacaactgtggttgtcggaacgtctttctcctc
ggcttcatcccagccaaggccgactccgtcgtcgtcctgctgtgtcgtcatccctgtgct
accctcagcaatctcaaggacatgaactgggatcccagccagtggcagccactgatacaa
gaccgacagttcctgtcctggctggtgaaggtgccctccgaccaggaccagatgcgagcc
aggcagatatcggcccagcagatcaacaagctggaggagctgtggaaggaaaatccagat
gcaaaactggaagatcttgagaaaccaggagtagatgaagaaccgcagcaggtacttctc
aggtacgatgatgcataccagtatcagaacatctttggtccgctggtgaagcatgaagcc
gactatgacaagaagctgaaggagtcacagacacaagataacattgtggcgcgctgggat
gtcggcctcaacaagaagaggattgcatactttcacatgtcctccgccaatgatgagatg
aaactgatgcatggagacgagttacggctacgttacatcggagaactgcacaaaccatgg
tctggtgttggccacgtcataaagataccagacaattacagcgatgaagttgcaatagaa
ctaaagagcaatgcaggcgtacctacagagtgtactcataactttgtggtggattttgtg
tggaagtcaacatcttttgacaggatgcaggcagcgctgaagacatttgccgtagacgag
acgtcggtgtggggctacatctaccacaagctgctcggtcatgaggtggaggatgtggta
ctcaagtgtcagctgcccaagcgcttctccgccccaggcctgcccgagctgaaccactcc
caggtgtatgctgtgaagactgtgttgcagagaccgaccagccttatccagggcccccct
ggaactggcaagacagtgacatcagctacaattgtgtaccaccttgtgaagcaaaacaat
ggtcccgtcctggtatgtgcaccttccaacattgccgtggatcagttgactgaaaagatt
catcgcacagggctcaaggttgtgcgactttgtgcaaagagtagggaagccatcgactca
cctgtatccttcctggctctccacaatcagatcaggaatatggaaagtgtgcccgaactg
caaaagctgcagcagctgaaggatgagacaggagagttgtcctcccaggatgagaagagg
tatcgtgccctcaagaaacagtgtgagaaggagctactgcaggctgctgatgtgatctgc
tgcacgtgtgtgggagctggtgatccccgcctcgccaagatgcagttccgatctgtgctg
attgatgagagcacacaagccacagaaccggagtgtatgatccctgtcatactaggatgt
cgacagctgatcctggtaggtgaccactgccagctgggtccagtcgtgatgtgcaagaaa
gcagcacgagctggtctatctcagtccctgtttgagagactggttgtcctcggcatcaga
cccatcagactgcaggtccagtaccgtatgcaccccgcactcagcgccttcccctccaac
atcttctacgaaggctcactgcagaatggagtcaccgcagctgagcgtagcaggaagaac
ctcgatttcccctacccgcagccagacaagccaatgttcttctactgtacatctggccag
gaagagatttcaagctctggaacatcctacctcaacagaactgaggctgctaatgtagaa
aagctgacgacacggtttctgcggtctgggatcaagcctgagcagatcggtatcatcacc
ccatatgaaggccagcgggcgtacctggtccagtacatgcagtacagtggagccctcaac
aagaagctctaccaggaaattgaggtggcaagcgttgatgctttccagggccgagagaag
gatttcattgtgctgtcttgtgtccgatccaacgaacaccaagggattggattcttgaat
gacccaaggcgtctcaatgttgctcttacaagagccagatatggcatcattattgtcggt
aaccccaaagtgctatcaaagcaaaccctgtggaaccacctgttgacatacttcaaggaa
cagaagtgtctggtggaaggccccctgaacaacctgaaggagagccttatccagttcagc
aagccacgcaaactcgtcaacactgctaatcctggaggcagattcatgagcaacaccatg
tttgatgcaagagaggtgctgatcccaggcagcatctatgacagatctgttggctaccgt
gagcctgtggtgagaactcacgaccagctcagcttcatcggaccagagcgagcctacact
ggagcagccctgagtctgccggtccctgtcaacatgttcctcccacaagttccccaacac
ttccaggcacaaccaatgccacaagctggaaacaagagcatgcaacccccacggcgtatg
ggtcagaaccaaaaccaaggccgtcgtcagaagccgccgcgctacagcaacatgcagcag
aacatctcgcagttcaacttgtccgggtcccagagccaggctagtcaggatgcatcacag
tcattctcacagggcccactgacccagggtcatctgtccatgagtcagccattccagatg
agtcagccagggctctctgggctctcgcaggcagagctgtcacaggatagcttcttagca
gaggacttcaagtcgcaggctgacggcatgttgtcgcaggactcgacttaccagggagac
cgtatgttctacgcttcccagctgtcccaggggcccttcaactag
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integrated database retrieval system
