Haliotis rufescens (red abalone): 124133407
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Entry
124133407 CDS
T07893
Name
(RefSeq) pre-mRNA-processing factor 19-like
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03040
Spliceosome
hrf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124133407
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124133407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrf03041
]
124133407
04121 Ubiquitin system [BR:
hrf04121
]
124133407
03400 DNA repair and recombination proteins [BR:
hrf03400
]
124133407
Enzymes [BR:
hrf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124133407
Spliceosome [BR:
hrf03041
]
Complex B
Other components
Prp19 complex
124133407
Complex C
Prp19-CDC5 complex
124133407
Ubiquitin system [BR:
hrf04121
]
Ubiquitin ligases (E3)
U-box type E3
124133407
DNA repair and recombination proteins [BR:
hrf03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
124133407
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
WDR55
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_WDR19_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_DCAF4
PEP5_VPS11_N
Beta-prop_HPS5
Beta-prop_RIG_2nd
U-box
Beta-prop_IFT122_1st
zf-Nse
Beta-prop_IP5PC_F
Beta-prop_WDR35_TULP_N
Beta-prop_LRRK2
RMC1_N
ATG16
Peripla_BP_2
Cytochrom_D1
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
124133407
NCBI-ProteinID:
XP_046353770
LinkDB
All DBs
Position
Unknown
AA seq
515 aa
AA seq
DB search
MALCCAISNEVPEHPVLSPVSGHVFERRLVEKYIQDHGNDPMNGEQLAVDLLVDIKTSPL
VKPRPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTARQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLPAGPGGYPQPAQAPAYAAEAGQEGIQPDSQMEEVGMSEEV
IQKLSDRATLLTAERKKRGKTVPEGLATTEDIRQYRQLASHTGLHSASVPGILSMDLCLR
DTSRIVTGGNDKNAVVFNKDTEQVMAILKGHTKKVTSVIYHPEEELVFSASPDCTIRVWG
ITTAQCAQIIRAHDSPVTGISLHATGDFLLSCSQDMHWAFSDIRTGRVLTKVCDTSSGSA
PALTCAQFHPDGLIFGTGTEDSVIKIWDLKERTNVANFPGHQGPITSIAFSENGYYLATS
AEDSVVKLWDLRKLKNFKTIQLDDSYEVKSLTFDQSGTYLAVAGSDVRAYLCKQWSELAV
FNDHTAAATGIRFGDNATFMASCSMDRSLKFFGMP
NT seq
1548 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtgctgtgcaattagtaatgaagtacccgagcatccagtgctctccccagtt
tccggccatgtgtttgagcgccgcctggtggagaagtacatccaggatcatggcaacgac
ccaatgaacggagaacagctggcagtggatttgctggttgatatcaaaacttctccactt
gttaagcccaggcccccatcagcaacaagtattccggccattctgaaagcacttcaagat
gaatgggatgctgtcatgttacacagcttcacactgaggcagcagctgcagaccgccagg
caagagttgtcccatgccttgtaccagcacgacgccgcctgtcgtgtgatcgcccgtctc
accaaggaagttacggctgccagagaagccttggccacactgaagccccaggctggtttg
ccagcagggcccggaggatacccacaaccagcacaagcaccggcgtacgctgcagaagct
ggtcaggaggggatccagcccgacagtcagatggaggaggtcggcatgtcagaggaggtc
attcagaagctgtcggaccgagctacactgcttacagcggagcgtaagaagagaggcaaa
acagttcccgagggtttggccacgacagaagacatccgtcaatacagacagctggcttct
cacactggtcttcacagcgccagtgttcctggtattctatcgatggacctctgtctccgg
gatacgtccaggatcgttacagggggcaatgacaagaacgctgtggtgttcaacaaggac
acggagcaggtgatggccatcctgaagggacacaccaagaaggtcaccagcgtcatctac
catccagaggaggaacttgtgttctcggcatcccccgactgtacgatccgagtgtggggc
atcactacggcccagtgcgcccagatcatccgtgcccacgactccccggtcaccggcatc
agtctccacgctacaggggacttcctgctcagctgctcacaagacatgcactgggctttc
tcagacatccgtacaggccgtgttctcaccaaagtctgcgacacatcatcgggatctgcc
ccagcgctgacatgtgcccagttccatcctgacggtctcatcttcggcaccggcacggag
gactcggtcatcaagatctgggatctgaaggagagaaccaatgtggccaacttccctgga
catcaagggcccatcaccagcatcgcattctcagaaaacggttactatctggccacctct
gctgaagactcggtcgtcaaactctgggatttgaggaaactgaagaacttcaagacaatc
cagcttgatgacagttatgaggtgaagagtctgacgttcgaccagagcggtacctacctg
gctgtggcaggatcggatgtcagagcgtacctgtgcaagcagtggagtgaactggcggtg
ttcaacgaccacacagcagcggcgaccggcatccgcttcggggacaacgcgaccttcatg
gcctcctgcagcatggacagatccctcaagttctttggcatgccttga
DBGET
integrated database retrieval system
