Haliotis rufescens (red abalone): 124134124
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Entry
124134124 CDS
T07893
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hrf
Haliotis rufescens (red abalone)
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hrf03016
]
124134124
Enzymes [BR:
hrf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124134124
Transfer RNA biogenesis [BR:
hrf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124134124
Prokaryotic type
tRNA splicing ligases
124134124
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
124134124
NCBI-ProteinID:
XP_048252785
LinkDB
All DBs
Position
Unknown
AA seq
504 aa
AA seq
DB search
MRTYNDELKYLEKISANCWHIKKGFVENMKVDGYFYTNERLEKLMFDELKHSCNSKGFGG
FLPGMKQIANVAALPGIVSKSIGLPDVHSGYGFAIGNMAAFDMNDPTAVVSPGGVGFDIN
CGVRLLRTNLHAKDVIPLKEQLSQCLFDHIPVGVGSRGIIPMTAQNLEEALEMGMDWSLR
EGYAWAEDKEHCEEYGRMLNADPSKVSNRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDDY
AAKKMGIEFKDQVCVMIHSGSRGMGHQVATDALVAMEKAMKRDKIDVNDRQLACAHIQSQ
EGQDYLRGMAAAANYAWVNRTSMTFLTRQAFAKMFKTTPDDLDMHMIYDVSHNIAKVEEH
FIDGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTE
TFGTTCHGAGRALSRAKSRRNLDYSDVLAALDQKGISIRVASPKLVMEEAPESYKNVTDV
VDTCHAAGISKKAIKLRPIGVIKG
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgaggacatataatgacgagctcaagtacttggagaaaatctccgccaactgctggcac
atcaagaagggatttgttgaaaacatgaaagttgacggttatttctacacaaatgaacgc
ctggagaagctgatgtttgatgaattgaagcactcgtgtaacagtaaaggtttcggcggc
tttcttccggggatgaagcagattgctaatgttgctgctctacctggaattgtatcgaaa
tctattggacttccagatgttcattctgggtatggcttcgcaattggtaacatggcagcc
tttgacatgaatgaccctactgcagttgtctcccctggtggtgttggtttcgacatcaac
tgcggtgtgcgtctcctgcgtacaaacctccatgctaaggatgtgatcccgttgaaggaa
cagctgtcccagtgcctgtttgatcatattccagtgggcgtcggctcacgggggatcata
cccatgacagcccaaaacttggaggaggcccttgagatggggatggactggtcgctgagg
gaaggctatgcgtgggcggaggacaaggaacactgtgaggagtatggcaggatgctcaat
gctgacccctctaaagtcagcaacagagccaagaagaggggcctaccacagctggggacc
ctaggtgccggaaaccactacgccgagatccaggtcgtggaggagatctatgatgactat
gcagccaagaagatggggattgagttcaaggatcaggtctgtgtgatgatccacagcggc
agccgtggcatggggcaccaggtggcgacagatgctctcgttgccatggagaaggcaatg
aagcgcgacaagattgacgtgaatgaccgccagctagcatgtgctcatatccagtcccag
gaggggcaggactacctgcgtggcatggccgccgccgccaactacgcctgggtcaaccgc
accagcatgaccttcctaaccagacaggcatttgccaagatgttcaagacaactccggat
gaccttgacatgcacatgatctatgatgtgtcgcacaacattgccaaagtagaggagcat
tttattgacggcaagcagaagacacttctggttcacaggaagggatccacacgagccttc
ccgccccaccaccctctcattccggtggattatcagctgacgggccagcctgttctcatc
ggcggcaccatgggcacatgcagctatgtgctgacgggcaccgaacagggcatgacggaa
acattcggcacgacgtgtcacggcgcagggagagcactctcccgagctaagtcgcggcgg
aacctggactactcggatgtgttggcagccctggatcagaaggggatcagcatcagggtt
gcatcccccaagcttgtgatggaagaggctccagaatcttacaagaatgtgactgatgtg
gttgacacatgtcatgcggccgggatcagcaagaaggcaatcaaactacgtcctattggg
gtcatcaaaggctag
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