Haliotis rufescens (red abalone): 124134959
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Entry
124134959 CDS
T07893
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124134959
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrf03041
]
124134959
Spliceosome [BR:
hrf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124134959
Complex C
U5 SnRNP specific factors
124134959
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
124134959
NCBI-ProteinID:
XP_046356032
LinkDB
All DBs
Position
Unknown
AA seq
2365 aa
AA seq
DB search
MAFPYTVIGPGGQPFLISQPVLQQIVVPMAPPQQQPPMPHPPQPPPPQQPKVPDYMSEEK
LQEKARKWQQLQSKRYAEKRKFGFIDAQKEDMPSEHVRKIIRDHGDMTNRKFRHDKRVYL
GALKYMPHAVMKLMENMPMPWEQIRDVSVLYHITGAITFVNEIPWVIEPVYIAQWGTMWI
MMRREKRDRRHFKRMRFPPFDDEEPPLDYADNVLDVEPLEAIQMDLDPDEDKDVGDWLYE
HKPLIDSKHVNGTTYRKWNLTLPQLSVLYRLANQLLTDLVDRNYFYLFDLKSFFTAKALN
LAIPGGPKFEPLVKDKDMHDEDWNEFNDINKIIIRQPVRTEYRIAFPYLFNNIPFQVHLS
WYHTPNVVFIKTEDPDLPAFYFDPLINPISHRNTVKGTEPLPDDDEEFELPEFVQPFLAE
TPLYTDNTANGIALLWAPRPFNLRSGRSRRAMDVPIVKNWYREHCPAGMPVKVRVSYQKL
LKYYVLNALKHKPPKAQKKRYLFRSFKATKFFQTTQLDWVEVGLQVCRQGYNMLNLLIHR
KNLNYLHLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDSHVQYRLGNVD
AFQLSDGIQYVFAHVGQLTGMYRYKYKLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGIW
APGWRVWLFFMRGITPLLERWLGNLLSRQFEGRHSKGVAKTVTKQRVESHFDLELRAAVM
HDILDMMPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPTPIENMILRFVKAKADWW
TNTAHYNRERIRRGATVDKTVCKKNLGRLTRLYLKAEQERQHNYLKDGPYITAEEAVAIY
TTMVHWLESRRFSPIPFPPLSYKHDTKLLILALERLKEAYSVKSRLNQSQREELGLIEQA
YDNPHEALSRIKRHLLTQRAFKEVGIEFMDLYSHLIPVYDVEPLEKITDAYLDQYLWYEA
DKRRLFPTWSKPSDSEPPPLLVYKWCQGINNLQDVWDTSEGECNVMLESHFEKMYEKIDL
TLLNRLLRLIVDHNIADYMTAKNNVVINYKDMNHTNSYGIIRGLQFASFIVQFYGLILDL
LVLGLHRASEMSGPPQMPNDFLTFQDVATETAHPIRLFSRYIDRIHIYFRFTAEEARDLI
QRYLTEHPDPNNENIVGYNNKKCWPRDSRMRLMKHDVNLGRAVFWDIKNRLPRSVTTIQW
ENSFVSVYSKDNPNLLFNMCGFECRILPKCRTTHEEFTHKDGVWNLQNEVTKERTAQCFL
RVDEESMQRFHNRVRQILMASGSTTFTKIVNKWNTALIGLMTYFREAVVNTQELLDLLVK
CENKIQTRIKIGLNSKMPSRFPPVVFYTPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGI
THFRSGMSHDEDQLIPNLYRYIMPWESEFIDSQRVWAEYALKRQEANAQNRRLTLEDLED
SWDRGIPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNY
RTDMIQALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIP
NRRFTLWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVV
MDLCQVFDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAYKWNVSKPSLLADSKD
VMDGATTQKYWIDVQLRWGDYDSHDIERYARAKFLDYTTDNMSIYPSPTGLLIAVDLAYN
LHSAYGNWFPGCKPLIQQALAKIMKANPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGE
LFSNQIIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQ
KRLGQLAKWKTAEEVAALIRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQ
LPFQACLKVEKFGDLILKATEPQMVLFNLYDDWLKTISSYTAFSRLILILRALHVNNDKT
KIVLKPDKTTITEIHHIWPTLTDEEWMKIEVQLKDLILADYGKKNNVNVASLTQSEIRDI
ILGMEISAPSAQRQQIAEIEKQTKEQSQLTATTTRTVNKHGDEIITSTTSNYESATFSSK
TEWRVRAISATNLHLRTNHIYVSSDDIKETGYTYILPKNILKKFIIISDLRAQIAGYLYG
VSPPDNPQVKEIRCIVMPPQWGTHQTVHLPNIQPEHEYLKEMEPLGWIHTQPNELPQLSP
QDITTHAKVMADNSSWDGEKTVIITCSFTPGSCSLTAYKLTPSGYEWGRQNKDTGNNPKG
YLPSHYERVQMLLSDRFLGFFMVPGQSSWNYNFMGVRHDPNMKYDLHLANPKEFYHEVHR
PSHFLNFSTMEDQEVIGADREDMFQ
NT seq
7098 nt
NT seq
+upstream
nt +downstream
nt
atggccttcccctatacagttatagggcctggaggccagcccttcttgatcagtcagcca
gttttacagcagatagtagtacctatggctcccccgcaacagcagccaccaatgccacat
cctccacaaccccctccccctcagcaacctaaagtgccggactacatgtcagaggagaag
ttgcaagagaaggctcgtaaatggcaacagcttcaatccaagagatatgcagagaaaaga
aagtttggcttcattgatgcccagaaggaagacatgccctcagaacatgtgcggaagatt
atccgagatcatggtgacatgaccaacagaaagttcagacacgacaagagagtgtattta
ggtgccctgaagtacatgccgcatgcagtgatgaaactgatggagaacatgcccatgccg
tgggaacagatccgtgacgtcagcgtcctctaccacatcaccggagccatcacattcgtc
aacgagataccctgggtcattgaaccagtatacattgcacagtggggaacaatgtggatc
atgatgaggagagagaaacgtgatcggcgtcacttcaaacgtatgaggttcccacctttt
gatgatgaggagccacctctagactatgctgacaacgtcctggatgtggaacctctggaa
gcaattcagatggatcttgacccagatgaagacaaggatgttggtgactggctgtacgaa
cacaaaccactcattgactcaaaacatgtgaatggcacaacgtacaggaagtggaacctg
actctcccccagctgtcggtgctgtatcgactggccaatcagctgctcaccgatctggtc
gacaggaactacttctatctgtttgacctcaagtccttcttcacagccaaagctctcaac
ttggccattcctggtggacccaagtttgaacctctggtcaaagataaggacatgcatgat
gaggactggaatgaattcaatgacatcaacaagatcatcatccggcaaccagtgagaaca
gagtacagaattgccttcccatacctgttcaacaacatccccttccaggtccatctctca
tggtaccataccccaaatgttgtcttcatcaagacggaggaccccgacttgccggcgttc
tactttgatcctctcattaaccccatctcacacaggaacacagtcaagggtacagagcct
ctgcctgacgatgatgaagagtttgagctgcccgagtttgtgcagccattccttgctgaa
acccccctgtacactgacaacacagcaaatggcattgctctgctgtgggcaccacgacct
ttcaacctccggtcaggaaggagcagacgagcaatggatgtaccgattgtcaaaaactgg
tacagagagcactgtccagccggcatgccagtgaaggtgagagtgtcctaccagaagctg
ctcaagtactacgttctcaatgccctcaaacacaagccacccaaggctcagaagaaaagg
tacctgttcagatccttcaaggctaccaagtttttccagaccacacagctggactgggtt
gaagttggcttgcaggtttgtcgtcaaggttacaacatgctcaacctcctcatccatcgt
aaaaacctcaactatctgcatctggactacaacttcaatctgaagcctgtcaagaccctc
accaccaaggaaagaaagaagtcccgttttggaaatgctttccacttgtgtcgtgagatc
ctgcgtctgaccaagcttgtggtggacagccatgtgcagtacagactgggcaatgtggat
gccttccagctgtctgatggtatccagtacgtgttcgcccacgtgggtcagctgaccggc
atgtaccgttacaagtacaagctgatgagacagatccggatgtgtaaagatctcaaacat
ctcatctactaccggttcaacacaggcccagtaggcaagggtccaggctgtggaatatgg
gcgcctggttggagggtgtggctgttcttcatgcgtggaatcacaccccttctggagcgt
tggcttggcaacttgctgtccagacagttcgaggggcgacactcgaagggggtggccaag
actgtcacaaaacagagagtggagagtcactttgatctggagttgagagctgctgtaatg
cacgacatccttgacatgatgccagaagggatcaagcagaacaaggccaggaccatcctg
cagcatcttagtgaagcctggaggtgctggaaggccaacattccatggaaggttcctgga
ttgccgaccccaatagaaaacatgatcctgaggtttgtgaaggcgaaggctgattggtgg
actaacacagctcactacaacagggagagaatcaggaggggagccactgttgacaaaaca
gtctgcaagaagaaccttggtcgattgacccgactttacctgaaggctgaacaggagcga
cagcacaactacctgaaggatggtccatacatcactgctgaggaggcagtggctatctac
accactatggtccactggctggagtctcgccgcttctcccccatcccgttccctccactg
tcatacaaacacgacaccaagcttctcatcctggctctggagagactcaaggaggcatac
agtgtaaagagtcgactgaatcagtcccagagagaggagctgggtttgattgagcaggcc
tatgacaaccctcacgaggctttgtccagaatcaagcgtcacctcctcacacagagagcc
tttaaagaagttggcattgagttcatggacctgtacagccacctgatcccagtgtatgac
gtggagcctctcgagaaaatcaccgacgcctacctggatcagtatctgtggtacgaggct
gacaagagacgactcttccctacgtggagtaagccctcagactcagagcctcctccactc
ctggtgtacaagtggtgccagggtatcaataacctccaggatgtgtgggacacgagtgag
ggggagtgtaacgtcatgctggagtcccactttgagaagatgtacgagaagattgacttg
acgctacttaacaggctgctccgtctcatcgtggatcacaacatagctgattacatgaca
gccaagaacaatgtcgtcattaactataaggacatgaaccacaccaactcgtacggcatc
atcagaggtctgcagtttgcatcattcatcgtacagttctatgggctgatcctggacctg
ctcgtcctcggcctacacagagccagtgagatgtccggcccgccacagatgcccaatgac
ttcctcacattccaggatgtggcaacagagacagcacatcctatacggctgttctcccga
tacattgatcgtattcacatttacttcagatttactgctgaggaagctcgtgacttgatc
cagcgctacttgactgaacacccggatcccaacaatgagaacatagtgggttacaacaac
aagaagtgttggccgcgagactccaggatgaggctcatgaagcacgatgttaatctgggt
cgtgctgtattctgggacatcaagaaccgtctgccgaggtcagtaacgacgatacagtgg
gagaacagcttcgtgtctgtgtacagcaaggacaatcccaacctcctgttcaacatgtgt
ggctttgagtgccgtatccttcccaagtgccgaaccactcacgaggagttcacacacaag
gacggcgtgtggaatctgcagaatgaggtgactaaggagcgaacagctcagtgttttctg
cgcgttgatgaggaatccatgcagaggttccacaaccgagttcgacagatcctcatggca
tcaggatccactacattcacaaagatcgtcaacaaatggaacacagctcttattggtctg
atgacatatttccgtgaagctgttgtgaacacacaggaactcctagatctgctagtcaaa
tgtgaaaacaaaatccagacacgtattaagattggtctcaactccaaaatgcctagtcgt
ttccctccagtcgtgttctacacgcccaaggaactggggggcctgggtatgttgtccatg
ggtcacgtgttgatcccccagtcagatctgagatggtccaagcagactgatgtaggcatc
actcacttccgctcaggtatgagtcacgatgaggatcagctcattccaaacttgtacaga
tacatcatgccctgggagagtgagttcattgattcccagcgagtgtgggcagagtacgct
ctcaagagacaggaggcaaatgctcagaacagacgtctgacactagaagatctggaggac
tcctgggaccggggcatccctcgtataaacacgctgttccagaaagatcgtcacaccctc
gcgtacgacaagggctggcgagtaaggacagacttcaagcagtaccaggtcctgaaacag
aaccccttctggtggacccatcagcgtcacgacggcaagctgtggaacctgaacaactac
cgcacagacatgatccaggccctaggaggtgtggagggcattctggaacacacactcttc
aaagggacttacttccccacgtgggaaggtctcttctgggagaaggctagtggttttgag
gagtccatgaagtacaagaagctgaccaacgcccagagatcaggtctgaatcaaatcccc
aaccgtagattcacgctgtggtggtcaccaacaatcaacagagctaatgtgtatgtaggt
ttccaggtgcagctggatctgacaggaatctttatgcacggcaagatcccaactctgaag
atctccctcatccagatcttccgagctcacttgtggcagaaaatacacgagagtgttgtc
atggatctttgtcaggtgtttgatcaagagttggatgccctggagattgagacagtccag
aaggagaccatccatcccaggaagtcctacaagatgaacagctcctgtgctgacatcctg
ctgtttgctgcgtacaagtggaacgtctccaaaccatctctactggcagactcaaaggat
gtgatggatggagccactacccagaagtattggattgatgtgcagctgagatggggagat
tacgactctcacgacattgagagatatgctcgagccaagttcctggactacaccacagac
aacatgagtatctacccctcacccactgggctcctcatagctgtcgacctggcctacaac
ctacacagtgcctatggtaactggttccctgggtgcaagccactgattcagcaagccctg
gctaagatcatgaaggccaacccagccctgtatgtgttgagggagaggatcaggaagggt
ctccagctgtactcctcagagcccactgagccgtacctcagctcccagaactatggagaa
ctcttctccaaccagatcatctggttcgtggacgacaccaacgtgtacagagtcaccatc
cacaagacatttgagggtaacttgaccacaaagcccatcaatggcgctatcttcatcttc
aaccccagaactggtcagctcttcctcaagatcatccacacctctgtgtgggctggacag
aagcgtcttggtcagctggctaaatggaagactgctgaggaagtagctgctctgattcga
tctcttcccgtggaggagcagcccaaacagatcattgtcacaagaaaaggcatgttggat
ccactcgaggtccatttgctggatttccccaatattgtcatcaagggcagtgaactccag
ttgcctttccaggcttgtttgaaggtggagaagttcggagatctgattctgaaggctaca
gaaccccagatggtactattcaacctgtatgatgactggctgaagaccatctcctcatac
acggcgttctctcgtctgatcttgatcttgagggctctgcatgtgaacaatgacaagaca
aagatagtgcttaagccagacaaaaccaccatcactgaaatccatcatatctggcccacg
ctcactgacgaggagtggatgaagattgaagtccagctgaaggatctcatcctggcggac
tatggcaagaagaacaatgtgaatgtagcctctttgactcagtctgagatccgagatatc
attctgggtatggagatctctgcgccgtccgcacaaagacagcagattgccgagatcgag
aaacagaccaaggagcagtcccagctgacagctaccacaactcggacagtcaacaaacat
ggtgacgagatcatcacctccaccaccagcaactacgaatcagccactttctcctccaag
actgagtggcgagtccgagccatctcagcaaccaatcttcatctgcgtaccaatcacatc
tatgtgtcatcggacgacatcaaagagactggctacacttacattctgcccaaaaatatc
ctcaagaaatttataatcatctcggatctgagagcacagattgcgggttacctgtatgga
gttagcccccctgacaacccccaggtgaaggagatccggtgtatcgtgatgccgccccag
tgggggacccatcagaccgtccacctgcccaacatacaaccagagcatgaatatctcaag
gaaatggaaccgctgggttggattcacactcagccgaatgagttgccacagttgtctccc
caggatatcactacacatgccaaggtgatggcggacaattccagctgggatggagaaaag
actgttatcatcacatgcagtttcacccccggctcctgttcactgacagcctacaagctg
actcccagtggttatgagtggggtcgccagaacaaggacaccggcaacaaccccaagggt
tacctcccctctcactatgagcgagtacagatgttgttgtctgacagattcctcggtttc
ttcatggtgcctgggcagagttcatggaactacaacttcatgggtgttcgacatgacccc
aacatgaagtatgaccttcaccttgccaacccgaaggaattctaccatgaggttcatcga
ccgtcccacttcctcaacttcagtaccatggaagatcaggaggtgatcggtgcagacaga
gaggacatgttccagtga
DBGET
integrated database retrieval system
