Haliotis rufescens (red abalone): 124135818
Help
Entry
124135818 CDS
T07893
Name
(RefSeq) fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124135818
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hrf00536
]
124135818
Glycosaminoglycan binding proteins [BR:
hrf00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124135818
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
124135818
NCBI-ProteinID:
XP_046357370
LinkDB
All DBs
Position
Unknown
AA seq
1439 aa
AA seq
DB search
MRLQECVCVVVLLVVTVAAAPEKDRGCTYLGIQYENGAVWLPNNEDKCFECLCDNGEALC
SFLADCDGYASALTAEEKKMRVMAAVTGLPGEDGERGPQGPKGEAGDSGPDGTNGVPGPP
GSPGQSEMSADQAYRRYYASRFSNKAGGGAAYGPQYLQAQVGPIGPRGLSGSPGPPGPQG
GRGIRGESGDSGPQGAPGSRGQPGPPGPSGPEGDSGRNGEAGAPGVPGARGPPGPSGMPG
LPGGKGHRGFSGFPGKRGEQGISGETGAVGAPGPSGAPGPVGPRGQSGERGQDGSSGPSG
LRGVDGLPGQPGSPGAMGGSGPPGSPGMIGAKGDAGAKGPKGGVGPQGPRGENGMPGADG
EDGLNGPPGQSGSDGEKGTGGDPGAAGSPGFPGPRGPPGLLGSPGLPGLKGAAGSPGQGG
YKGEQGLKGSPGTPGDRGQPGPPGTQGRRGGRGGAGAAGPQGLSGERGLPGARGSPGSPG
NAGPKGEDGDSGARGERGQTGSMGEAGRPGPPGPPGEAGAVGPAGPDGKSGPPGPSGPSG
NDGRPGEMGAPGPSGSPGQQGAQGPTGERGNNGKSGNPGQQGPRGPPGDNGPTGEMGPQG
APGPEGEPGPRGAEGPPGGPGFQGAPGLPGPPGEAGTEGEPGTPGGPGQAGRTGNRGERG
FPGERGPMGPVGEPGSPGQVGPAGNDGERGIPGEIGIQGDLGPQGPMGMPGERGPAGEMG
GKGDDGDAGPPGPDGNTGRPGLSGPPGEPGPPGLAGPPAEKGQPGDPGFRGQSGPPGASG
ERGNGGPDGEPGYPGLPGASGGAGNKGEAGLPGSKGEQGDGGAAGEPGSQGPSGVPGIQG
RKGPRGEQGVAGIPGEPGAPGAPGSQGLSGQQGLPGPAGPAGTPGIKGARGSTGNMGQAG
KNGAPGQSGNPGQKGNRGEDGSPGSSGPTGPQGASGERGEPGMPGPPGETGPGGPQGPNG
ARGANGRRGSDGLPGKPGPPGPVGGPGSNGPTGPSGAPGADGAAGLPGRQGEAGIIGDAG
RVGPSGLPGLQGPAGPSGPVGEAGVRGERGAIGPLGPRGPQGLRGSPGVQGEQGVDGEEG
DAGKNGDKGDPGYMGLPGLPGPEGPIGENGALGPRGPAGERGNDGTRGQPGPAGEDGPGG
PRGAPGPRGPAGEDGRRGSAGLPGNPGPPGPPGESVYGRAMTGWATGSKGPGYMGDVPSA
EGETEEARNAIKALKDVEEEIKKLRDPTGTKDAPGRTCHDLFKNNPEITDGWYFIDPNGG
GISDSFEAECLFNGKRTETCLHPIQTGYESQQWFTRKENPEAHVWFAETFDESGFFNYGV
HQSQVKYLHQMSSRARQDIVFSCKNTVIIADQTPGNIRKAIRLGSFDEEIMGPVAKKPYR
FRVKSDTCMTSNGKFGETIIEVRGRGQRVERMPIIDVGLYDVGGEDQEFGIQIGPACFS
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atgcgccttcaggagtgtgtctgtgtagtggtacttctggttgttacagtcgcagccgcc
ccggagaaagatcgagggtgcacatatctaggaattcagtacgagaacggagcagtatgg
ctgccaaataatgaggacaaatgttttgaatgtctttgcgacaatggcgaggctctctgt
tccttccttgccgactgtgacggttacgcctccgccctcaccgcagaggagaaaaagatg
agggtaatggctgccgtcaccggcctgcctggtgaggatggagaacgaggcccacaaggt
ccaaagggagaggctggagattccggtcctgatggaactaatggtgtccccggaccccct
ggctccccaggacagagcgagatgtcagctgaccaggcttaccgccgttactacgccagc
aggttctccaacaaagctggtgggggagctgcctacggacctcagtatcttcaagctcaa
gttggacccattggaccacgtggattgagtggatctccaggaccacccggaccccaagga
ggccgtggaatcagaggtgaatctggagacagcggaccacaaggagcccccggaagtcgt
ggacagcctggaccacctggaccaagcggacctgagggtgacagtggacgtaatggtgaa
gcaggagctcctggtgtccctggcgctaggggaccacctggaccatctggcatgcctgga
cttcctggtggaaagggacacagaggtttctctggcttccctggaaaacgcggagagcag
ggtatttcaggagagactggtgccgtcggtgccccaggtccatccggagctcctggtcca
gttggcccccgtggtcagtctggcgagaggggtcaggatggttcttctggaccttcaggt
cttcgtggtgttgatggcctgcctggacaacctggatccccaggagctatgggaggatcc
ggacctcccggatctccaggaatgattggagctaagggtgacgctggtgctaagggaccc
aagggaggagttggaccccagggtcctcgtggagagaacggtatgcctggagctgacgga
gaggatggactgaacggacctccaggacaatcaggaagcgatggcgagaagggtactggt
ggtgatccaggagcagccggatctccaggattccctggaccccgtggaccccccggactc
ttgggaagccccggattgcctggtcttaagggcgctgctggatcccccggtcaaggtgga
tacaaaggcgaacaaggtctgaagggttccccaggtacccctggcgacagaggacaaccc
ggaccccctggaacccagggaagacggggtggccgtggtggtgctggtgccgccggaccc
cagggactcagtggagagaggggtcttcccggtgcacgtggaagtcctggaagtccaggt
aacgccggacccaagggagaagatggagattccggtgcccgtggagagaggggacagaca
ggctctatgggagaggctggacgcccaggtccccccggaccccctggtgaggcgggtgca
gtgggaccagctggacctgatggaaaatctggaccacctggaccttctggtccatctggt
aatgatggacgccccggggagatgggtgcccctggcccctccggttccccaggacagcag
ggcgctcaaggcccaactggagagagaggaaacaacggcaagtctggtaaccctggacaa
caaggacctcgtggaccccccggagataacggaccaactggtgaaatgggaccccaggga
gctcctggacccgagggagagcccggccccagaggcgctgagggaccccccggaggacct
ggattccagggtgccccaggtcttcccggaccccccggagaggctggaacagagggagag
cccggtacacccggaggacccggacaagccggacgcactggaaacaggggagagcgtggt
ttccccggtgaacgcggacccatgggacctgttggcgagcccggatcacccggtcaagtt
ggacccgctggaaatgatggcgagagaggtattcccggagagattggtatccagggtgac
ctaggtcctcagggacccatgggtatgccaggagagcgcggtcccgctggagagatggga
ggaaagggagatgatggtgacgcaggacccccaggccctgatggaaatactggccgcccc
ggtctttcaggtcctcctggagagcctggcccccctggtcttgccggtccccctgctgag
aagggacaacccggtgaccctggcttccgtggacagtccggaccccctggtgcctctgga
gaacgcggaaatggtggtcccgatggagagcccggatacccaggtcttcctggtgcctcc
ggaggtgcaggtaataagggagaggcaggtctgcctggatctaagggagagcaaggtgac
ggtggcgctgctggtgaacccggaagtcaagggccatctggtgttcctggtattcaaggc
cgcaagggtccccgaggagaacagggagtggctggaatccccggtgagccaggtgccccc
ggagccccaggatcccagggtctctcaggtcaacaaggtctccccggacccgctggacct
gctggcactcctggtatcaagggagcacgtggatccactggcaacatgggacaggctggc
aaaaatggtgctcccggacagtctggaaacccaggacagaagggtaaccgtggagaggat
ggttcacctggatcatctggaccaactggtcctcaaggtgcctcaggagagcgcggtgag
ccaggtatgcctggaccacctggtgagactggacccggaggaccccaaggacctaatgga
gctcgtggagccaatggacgtcgtggaagcgatggacttccaggaaaacctggaccacct
ggaccagttggaggtcccggctccaacggaccaacaggaccctctggagctcccggagct
gatggtgccgctggtcttccagggcgtcaaggcgaggctggaattattggagatgccgga
cgagttggaccctcaggcctaccaggacttcagggtccagccggacctagtggaccagta
ggcgaggccggtgtacgaggagaaaggggagcaattggaccacttggaccccgtggacca
cagggattgagaggttctcccggagttcaaggagagcaaggagttgatggagaggaggga
gatgctggcaaaaatggagacaagggagacccaggctacatgggacttcctggattaccc
ggacccgagggtccaattggagagaatggtgcattaggacctcgtggaccagctggagag
aggggtaacgacggtacccgtggacaaccaggaccagcaggagaggacggacccggtggc
ccacgtggtgcccccggcccccgtggacccgctggagaagatggaagaaggggatccgcc
ggtcttcccggaaatccaggaccccccggacccccaggagagagcgtgtacggccgtgct
atgaccggctgggccactggatccaagggacctggctacatgggtgacgtaccatctgcg
gagggtgaaactgaggaggcacgtaacgccatcaaggccctgaaggatgttgaggaggag
atcaagaagctgagggaccccactggaaccaaggacgcccctggtcgtacctgccatgac
ctgttcaagaacaaccccgagatcactgatggttggtacttcattgatcctaatggtggt
ggtatcagtgattcctttgaagctgaatgtctcttcaacggaaaaaggaccgagacttgc
ttacacccaatccaaactgggtatgagagccaacaatggttcaccaggaaggagaaccca
gaagcccacgtgtggttcgcagagactttcgatgaaagtggctttttcaactatggcgtc
caccagtctcaagttaagtacctccaccaaatgagcagccgtgctcgccaggatatcgta
ttcagctgtaagaacaccgtcatcatcgccgaccaaaccccaggcaacatcaggaaggct
ataaggctcggcagcttcgacgaggaaatcatgggaccagttgccaagaaaccatacaga
tttagagtaaagtcagatacatgcatgacaagcaacgggaaatttggagaaacaataata
gaagtccgcggccgtggacaacgcgtagaaagaatgccaattatcgatgtaggactttat
gatgtcggtggagaagatcaagaatttggtattcaaatagggcccgcttgcttcagctga
DBGET
integrated database retrieval system
