Haliotis rufescens (red abalone): 124136458
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Entry
124136458 CDS
T07893
Name
(RefSeq) DNA mismatch repair protein Msh6-like
KO
K08737
DNA mismatch repair protein MSH6
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
124136458
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hrf03400
]
124136458
DNA repair and recombination proteins [BR:
hrf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
124136458
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
PWWP
MutS_IV
MutS_II
MUM1-like_PWWP
Plasmid_RAQPRD
DUF6119
Motif
Other DBs
NCBI-GeneID:
124136458
NCBI-ProteinID:
XP_046358330
LinkDB
All DBs
Position
Unknown
AA seq
1346 aa
AA seq
DB search
MSVKQSNLFSFFSKTPNKVPNNETPKKDVLSPRRSPNSGKRKTPTTNGNRNVTDTDPEFE
LGAVVWAKLEGYPWWPSLVCNHPTQKKHVKGGKQVQLHVQFFDDPPSRAWIRAKYVKAYK
GSGDKAFQRGGQFHCHDAECYEGALKADAAMKMSVEERLSTLIVDLQPSDSEDSAEEAAE
LIDLDPDIFDAEMQDDEADNSKENHNDSIKTDDSKISPRKTPSKKCRPSRSSQKHKRRRI
MLSTSGDEESGDEFKPDSGSSDEDDSGSSGEDEDNVSGPETESDAESPVKDRKRKRPSST
PKPKSSSQPSIADRFAGSMLSAERRHSFKPAVSDKTKSKLASFNAPEQVVTDTPDIQGDF
PHVKLDFLQPDKIRDIKGRKQNTDDYDPRTVMVPDTFMKKQTPAMRQWWELKAHHYDTIL
FFKMGKFYELFHMDAVIGVSELGLIYMKGEHAHSGFPEIAYTRYADSLIQKGYKVARVEQ
TETPDMMSERCKHMSRTATKFDKVVKREVCQVTSRGTKTYRHVEGDCSDVDSNYLLAISE
KEAGSDGGSMYGVCFIDTSVGIFHLGQFTDDRHGSRLRTVIAHHTPSLVLYERGKMSAKT
MQLINTNLSSALKESLASGTEFWDSSKTLKTLAEEDYFKMDGELFEWPGDLKGMMSESDS
LGLTAADEFDLAVHSLGAVTWYLQYSLLDQELLSMRKFVQYRPVDSAPTVKKTAAQFSQK
HMVLDGVTLLNLDLVENCMTGTTEGTLLERLDQCCTPFGKRLFRQWLCAPLCSPAAINDR
LDAVEDLMASQDLLVDMVEVMKKLPDLERLLSRIHTLGSACRSRNHPDSRAILYEEVTYS
KRKIEDFLATLGGFKSAFQMAQKLQTHTSNFKSTLLKKTISICCSQADQGHFPDISEDLA
FFDAAFDHTKARKDGTILPSKGVNLDYDQASQDIKAIEKRLVQYLDKQRDRLSCMAMVYW
GTAKNRYQMEIPEVAWKRVPNEYEVMSSKKGWKRYRTPDIEDMLADLTEAEDRKDTALKD
TMRRVFSSFDERHKKWRDVLDCLSVLDVIISLAEYSRCGDGVTCRPELVDLGQNVEPFLE
LRDARHPCIARTFTGGDFIPNDTVIGVDDETDEGGVYSNSRIVLVTGPNMGGKSTLMRQV
GLITIMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMAGESTFFVELSETSAILQHASKH
SLVLMDELGRGTATYDGTAIACSVVQELSKGVNCRTLFSTHYHSLVEEFSHDANVRLGHM
ACMVENENEEDPSQETITFLYKFIKGACPKSYGFNAARLADIPEEVIKAAVGKAKEFEES
FNRLKVLKSLWWDCTAECVRAMQQLH
NT seq
4041 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtaaaacaatcaaatctgttctcgttcttctcaaaaacgccaaacaaggttcct
aacaacgagacacctaagaaagacgtgttgtcaccacgtcgatcaccaaattcgggaaaa
aggaaaacccccacaaccaatgggaacaggaatgtcactgacactgacccagagtttgag
cttggtgctgttgtatgggccaagttggaggggtacccatggtggccaagtcttgtgtgt
aatcatccaactcagaagaaacatgtcaaaggaggaaaacaagtccagctgcatgtgcag
ttctttgatgaccctccttctcgggcctggatccgggcaaaatatgtcaaggcctacaaa
ggctcgggtgacaaggcgttccagcgagggggtcagttccactgccacgacgctgagtgt
tacgagggggcactgaaggctgatgctgctatgaagatgagtgtggaggaacgactgtcc
actctcattgtggaccttcagccatcagacagtgaggatagcgcagaggaggcagcggaa
ctcatcgacctggaccctgacatttttgatgcggagatgcaggatgatgaagcagacaac
agcaaggaaaatcataatgacagcatcaagactgatgacagcaagattagtccaagaaaa
acacccagtaagaagtgccgtccttcccggtccagtcagaagcacaagaggaggcgtatt
atgttgtccaccagtggagatgaggagtcaggggatgagtttaaaccggactccggcagc
agtgatgaagatgacagcggcagtagtggtgaagatgaggacaatgtgtccgggccagaa
acagaatctgatgctgagtctccagtcaaggatagaaagaggaagcggcccagctccact
cctaaacccaagtcctccagtcagcccagtatagctgacaggtttgcaggctccatgttg
tcagcggagagacggcacagcttcaagcctgcagtgtccgataaaaccaagtccaaactt
gcctctttcaatgcaccagagcaagtagtgacagacacccctgacattcagggagatttc
cctcatgtgaagctggacttcctacaaccagacaagattagagatataaaggggagaaaa
cagaatactgatgactacgacccaaggacagtaatggtaccagacacgttcatgaagaaa
caaactcctgccatgcggcagtggtgggagttgaaagcacatcattatgacaccattttg
tttttcaagatgggtaaattctatgagctgttccacatggatgcagtgattggtgtttct
gagctaggacttatttacatgaagggagaacatgcccattcaggattcccagagattgca
tacacaaggtatgcagactccctgatacagaagggctacaaggtggccagggtggaacag
acggagaccccagacatgatgtctgagagatgtaaacacatgtcgcggactgcaaccaag
tttgataaggttgtaaagagagaggtgtgtcaggtgacgtccaggggcaccaagacgtat
cgtcatgtggagggagactgcagcgatgttgacagcaactacctactggccatatctgag
aaggaggccggatctgatggaggcagtatgtacggtgtttgtttcatagacacgtctgtt
ggaatattccatctaggccagttcacagatgaccggcacggttcccgcctccgcacagtc
atcgcccaccatactccctccctggtgttatatgagagagggaagatgtcagccaagaca
atgcagttgatcaacaccaatctgtcaagtgccctgaaggaatcattagcatcagggacc
gagttctgggacagctccaagactctgaagacactagcagaggaagattacttcaaaatg
gatggagaattgtttgaatggcctggagacttgaaaggaatgatgtctgaaagtgactct
cttggactgactgcagctgatgagttcgatctggcagtgcattccctgggtgccgtaaca
tggtacctccagtactctctgttggaccaggagctgctgagtatgaggaagtttgtacag
taccggccggttgactctgctcccactgtaaagaagactgctgcacagttctcacagaaa
cacatggtgctggacggggtgaccctgttgaacctggacctggtggagaactgcatgacc
gggaccacagagggcactctgctggagagactggaccagtgctgcactccgtttggcaag
agattgtttcgccagtggttgtgtgcgcctctgtgtagcccggcagccatcaatgatcgc
ctagatgctgtggaagacctgatggcctcacaggacctgctggtggacatggtggaggtc
atgaagaaactacctgacctggagagactcctcagcagaatccacacattaggatcagct
tgcagaagcaggaaccacccggacagccgagccatcctgtatgaagaagtcacctacagc
aaaagaaagatagaagattttcttgcaacacttgggggatttaaatctgcgtttcaaatg
gcacagaaactgcagactcacacttctaattttaagtccacactactgaagaagactatc
tccatatgctgctcccaggcagaccagggacacttccctgacatcagcgaagacttggca
ttctttgatgctgcttttgatcacactaaagcacgtaaggatggaactatattaccaagc
aaaggggtcaacctggactatgaccaggcctcccaggacatcaaagccatcgagaagaga
ctggttcagtatctggacaaacagcgagatcggcttagttgcatggcaatggtgtactgg
ggcaccgccaagaaccgctaccaaatggagataccagaggttgcatggaaacgggtacct
aatgagtatgaggtgatgtcatctaagaaaggttggaaacggtaccggacaccagacatt
gaggacatgttggcagacttgacagaagctgaagatagaaaggacacagcactgaaggac
acgatgagaagagtattctccagctttgatgaaagacacaagaaatggcgtgatgttttg
gactgcctctcggtattagatgtgattatctcccttgctgagtactctcggtgtggagat
ggcgtcacttgtcgcccagagcttgtggacttgggacagaatgttgagccattcctggaa
ttgcgtgatgctcgtcacccctgtatcgctcggacattcactggcggagacttcatacct
aatgatacggtcataggtgtggatgatgagacagatgagggtggtgtgtactccaacagt
cgcattgtgttggtgacagggcccaacatgggtggcaaatctacactcatgagacaagtg
gggctgataactatcatggctcaactgggctgttatgtcccagccgagaagtgtaggctg
acccccgtagaccgagtcttcacccgtcttggtgccagcgatagaataatggcaggtgag
agcacgttctttgttgaactgagtgagacatcagccatcttacaacatgccagcaagcac
tctcttgtcctcatggatgagctaggtcgaggcacagcaacatacgatggcactgccatt
gcctgctctgtcgtgcaggagttgtccaagggtgtcaattgtcgtacactcttctcaact
cattaccactcactggtggaggagttcagtcatgatgctaatgtcaggctgggacacatg
gcatgtatggtggagaatgagaacgaggaggatccatctcaggaaactatcaccttcttg
tacaagtttatcaagggcgcgtgccccaaaagttatggcttcaacgctgctcgtctcgct
gacattccagaggaggtgatcaaggcagcagttgggaaggcaaaagagtttgaagaaagt
tttaacagattgaaagttctaaagtccctgtggtgggactgcactgcagaatgtgtgcgt
gccatgcagcagcttcattga
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