KEGG   Haliotis rufescens (red abalone): 124142883
Entry
124142883         CDS       T07893                                 
Name
(RefSeq) DNA excision repair protein ERCC-8-like
  KO
K10570  DNA excision repair protein ERCC-8
Organism
hrf  Haliotis rufescens (red abalone)
Pathway
hrf03420  Nucleotide excision repair
hrf04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:hrf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    124142883
  09124 Replication and repair
   03420 Nucleotide excision repair
    124142883
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hrf04121]
    124142883
   03400 DNA repair and recombination proteins [BR:hrf03400]
    124142883
Ubiquitin system [BR:hrf04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     124142883
DNA repair and recombination proteins [BR:hrf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      124142883
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EIPR1 EIF3I WDR55 Beta-prop_RIG_2nd NBCH_WD40 WD40_Gbeta ANAPC4_WD40 Beta-prop_SPT8 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st WD_LRWD1 Beta-prop_Aladin Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_WDR75_1st Beta-prop_SCAP Beta-prop_RIG_1st WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT140_1st Beta-prop_Nup120_160 Beta-prop_WDR11_2nd Beta-prop_HPS5 Beta-prop_DCAF12 eIF2A Beta-prop_Vps41 DUF8182
Other DBs
NCBI-GeneID: 124142883
NCBI-ProteinID: XP_046367532
LinkDB
Position
Unknown
AA seq 402 aa
MLRLFTDREYGIDSPMILSRAETTRRIFSLELSKHRDVDRVHDGGINSLDIDLIESRYLL
SGGSTGGISIHDLENFSGNVKHSYKHVCGVDRSNRYMHKHSIQTVQWYPLDTGIFTSSGT
DKLLKVWDTNRLVPADTFEFSTIVYSHHMSPIATKHNLLAVGCQGSTVKLVDLKAGSATH
MLKGHKSCVMSVKWSTRDEFILATGSTDNRVLLWDVRAAKGHLMSLDQHNGEAASSVANS
TTAHGGRVNGLSFTHDGLFLVTFGTDNRLRLWNTYTGKNCMVNYGSIENDSKKNIQIGLS
QGGCPDVIFVPNDGNIDILDLHKGGYINTLRGHYNVVNCCLFNTNSHELFSGGSDRNILV
WVPHTDSAYDEHLKDDSKSIQNPSFVKRIAATADTWSSDEDE
NT seq 1209 nt   +upstreamnt  +downstreamnt
atgctgagactttttacggacagagaatacggcattgatagcccgatgatattgtccaga
gcggagacaaccaggagaatatttagtttagaacttagtaaacacagagatgttgaccga
gtccatgatggtggcatcaatagcttggacatagatctgatagaatcgagatatttgtta
tcgggagggtcgactggaggaatatctattcatgatctggagaatttcagtgggaatgtg
aagcactcctataagcatgtctgtggagtggaccgatccaacagatacatgcacaaacac
agcatccagactgttcagtggtacccgttagacacgggcatattcacctccagtggaact
gataaactattgaaagtgtgggacaccaacaggcttgtgcctgcagataccttcgagttc
agcaccattgtatacagtcatcacatgtctcccatcgccaccaaacacaacctgcttgct
gtcggatgtcaaggatcaactgtgaagctggtagatctgaaagctgggtcagcgacccac
atgctgaagggacacaagtcttgtgtcatgtcagtcaagtggtctacaagggatgagttt
attttggcaactggcagcactgacaatcgggtcctgctgtgggatgttcgtgctgccaag
gggcatctgatgtcgctagatcaacataatggagaagcagcatcctcggtcgccaattcc
acaactgcccatggtggacgagtgaatggtttgagttttacccacgatggcttgttcctg
gtgacatttggaacagacaacaggctacgtttgtggaacacgtatactggaaaaaactgt
atggtgaattacggctctatagaaaatgacagtaagaaaaacatccagattggtctctcc
caaggtggctgcccggatgtgatctttgtgccaaatgatggtaacattgacattttagat
ctccataaaggcggctacatcaacacattacgagggcattataacgttgtcaactgctgt
ctgtttaacacaaacagtcatgaactgttcagcggaggaagtgatcgcaacattctggtc
tgggttccccacacagacagtgcttatgatgagcatctcaaggatgactctaagagcata
caaaatccgagttttgtgaagagaatagccgcgacggctgacacctggagcagtgatgaa
gatgaatga

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