Haliotis rufescens (red abalone): 124143088
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Entry
124143088 CDS
T07893
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03022
Basal transcription factors
hrf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124143088
09124 Replication and repair
03420 Nucleotide excision repair
124143088
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrf03021
]
124143088
03400 DNA repair and recombination proteins [BR:
hrf03400
]
124143088
Enzymes [BR:
hrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
124143088
Transcription machinery [BR:
hrf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124143088
DNA repair and recombination proteins [BR:
hrf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124143088
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
124143088
NCBI-ProteinID:
XP_046367836
LinkDB
All DBs
Position
Unknown
AA seq
795 aa
AA seq
DB search
MGGSKKDKRDKGERSSKRAKVVEVEYDDYDDESQETDNVKDIATVASKQVEERSAEDEFG
AKDYRKLLELKLDHNSRPLWVAPNGHVFLESFSPVYKHAHDFLIAISEPVCRPLHIHEYK
LTAYSLYAAVSVGLETNDIIEYLRRLSKTSLPNGIIEFIKLCTLSYGKVKLVLKHNRYFV
ESQHPDVLQKLLKDPVIQECRKRDDAEEDATAEGFIKGEVSVKSALHLNRPATTAAASSS
QTDQTATGAEGETATEEDKVPDDIFDYYDKLDKDEDDEDDNQLKTVSFEVMQERVEDVQK
RCIELEHPLLAEYDFRNDTVNPDVNMDLKPSTVLRPYQEKSLRKMFGNGRARSGVIVLPC
GAGKTLVGVTAACTVRKRCICLCTSGVSVEQWRSQFKMWSTVDDSLICRFTSDAKDKPMG
CAICISTYSMLAHSMKRSWEAEKMMEWMQSQEWGIMLLDEVQTIPAKMFRRVLTIVNAHC
KLGLTATLVREDDKIADLNFLIGPKLYEANWMELQNAGYIARVQCAEVWCPMAPEFYREY
LQMKSMKKLLLYCMNPNKFRACQFLIRYHERRNDKIIVFADNVFSLKHYAIKLNKPYLYG
PTSQGERLQILQNFVHNPKVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRMGR
ILRAKKGSAAETYNAFFYTLVSQDTMEMQYSLKRQRFLVNQGYSYKVITKLAGMDQEELA
YSTKEEQMSLLQKVLAATDQDAEEEGGPDGGRPGVFRKAGSMSSMSGADDSVYMEYKRGG
LKSAALHPLFKRFRR
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atggggggaagtaaaaaggacaagcgtgataaaggagagagatcctcgaagagggccaaa
gtcgttgaagtagaatatgatgactatgatgatgaatcccaggaaacagataatgtcaaa
gacatcgcaacagttgcatctaagcaggtggaagaacgaagtgcagaagatgaatttggt
gccaaagattatcgcaagctccttgagctgaaacttgaccacaactcgcgacccttgtgg
gtggcacccaatgggcatgtgttcctggaatccttctcccctgtgtacaaacatgcccat
gacttccttatcgccatatccgagccagtgtgtcgaccgctccacatacacgagtacaag
ctgacggcctactccctgtatgccgccgtctctgtgggcctggagacaaatgacatcatt
gagtatcttcgccgactcagcaaaacatccctccctaacggaatcattgagtttataaag
ctgtgcactctgagttacgggaaggtgaagctggtcctgaagcacaacagatactttgtg
gagagccagcacccagatgtcctgcagaagctgttgaaggatcctgtcatccaggaatgt
cgcaagcgggacgatgcagaggaggacgccactgccgagggctttatcaagggagaggtg
tcggtgaagtcagcactacatttgaacaggccagcgacgacagccgcagcgtcatcttcg
cagacagatcagacagcaacaggggcggagggggagacggctacggaggaggacaaggtg
ccggacgatatatttgactactacgacaagctggacaaggacgaggatgatgaggatgat
aatcaactcaagactgtgtcctttgaggttatgcaggagcgtgtggaggatgtgcagaag
cggtgtatagagctggagcatcctctgctggcagaatatgacttcaggaatgatacagtc
aacccggatgtgaacatggatctgaagccgtccacagttctgcgaccctaccaggagaag
agtcttcggaagatgtttgggaatggcagggctcggtcgggagtcattgtgctaccctgc
ggtgccggtaagactctggttggggtgacagctgcctgtaccgtgaggaaacgctgcata
tgtctgtgtacatcaggagtgtcggttgagcagtggaggtcacagttcaagatgtggtct
acagtagatgacagtctgatctgtaggttcacctcagatgccaaagataaaccaatgggc
tgtgccatctgcatcagcacttactccatgttggcgcactccatgaagcggtcgtgggag
gcggagaaaatgatggagtggatgcagagccaggagtggggcatcatgctccttgatgag
gtacagacaattccagccaagatgttccgacgggtactgaccattgtcaatgcccactgc
aaactgggactgaccgcaacactggtccgtgaggatgacaagattgctgacctcaacttt
ctgatcggccccaagctgtacgaggctaactggatggaactgcagaatgccggctacatt
gcccgtgtacagtgtgctgaagtctggtgtccaatggcgcctgaattctacagagaatat
ctacagatgaaatctatgaagaaactgctgctgtactgcatgaatcccaacaagttccgg
gcctgtcaattcctcatccgctaccacgagaggaggaacgacaagattatcgtgtttgct
gacaatgtgttttctctcaagcattatgctatcaaactcaataaaccctacctgtacggc
ccgaccagccagggggagagactgcagattctccagaactttgtgcacaaccctaaagtc
aacacaatctttgtgtcaaaggttgcagatacttcatttgacctgccagaggcaaacgtc
ctcattcagatatccgctcacggaggatcccgaagacaggaggctcagagaatgggcagg
attctgagggcaaagaaaggttcagcagcagagacgtataatgcctttttctacacgctg
gtgtctcaggacaccatggagatgcagtactccctcaagcgtcagcgcttcctcgtcaac
cagggctacagctacaaggtcatcaccaagctggctggcatggaccaggaggagctggcc
tacagcaccaaggaggagcagatgagtctgttgcagaaggtgctggccgccacagaccag
gatgcagaggaggaaggagggccagatggcggcagaccaggggtgttccgcaaggctggt
agcatgagctctatgtcaggagcagatgactcggtgtacatggagtacaagagaggcggc
ctcaagtctgcagccctacatccactcttcaagcggttcaggagatga
DBGET
integrated database retrieval system
