Haliotis rufescens (red abalone): 124144542
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Entry
124144542 CDS
T07893
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 2-like
KO
K14402
cleavage and polyadenylation specificity factor subunit 2
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124144542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrf03019
]
124144542
Messenger RNA biogenesis [BR:
hrf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124144542
U7-dependent histone pre-mRNA processing factors
124144542
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_6
CPSF100_C
Beta-Casp
RMMBL
Anti-Pycsar_Apyc1
MBL_MAP1B
Lactamase_B
Lactamase_B_2
LIAS_N
Motif
Other DBs
NCBI-GeneID:
124144542
NCBI-ProteinID:
XP_048259906
LinkDB
All DBs
Position
Unknown
AA seq
763 aa
AA seq
DB search
MTSIIKLHVFSGSQGESPPCYMLQVDEFRFLLDCGWDEDYSMDHIRELKRHLHQIDAVLL
SYPDQQHLGAVPYLVGKAGLSCPIYSTIPVYKMGQMFMYDLFQSRHNTEDFDMFTLDDVD
AAFDKIIQLKYSQTITLKGKGHGLQITPLAAGHMIGGTIWKIVKDGEEEIVYAVDYNHKK
ERHLNGCVLEMFNKPSLMITDSFNATYNQPRRRLRDEQLMTTILQTMRNDGNVLVAVDTA
GRMLELAQLLDQMWRSAESGLSPYSLALLNNVSFNVVEFAKSQVEWMSDKIMRAFEDNRS
NPFQFKHLKLCHNLAELARVPEPKVVLASTPDLQCGFSRDLFTAWCTNAKNSIILTNRTS
PGTLARWLIDNQQNKTVTMEVRRRIRLDGPELEDYMKKKQEKKAQEKLKKTELSKLDLAD
ESSDESEAEMEVEAYGSKPGKGKHDLMIQGEGKQRSGFFKQAKKSYPMYPFHEEKIKWDE
YGEIIRLEDYTILDVVAPDEDMATNETATADDTMQDVSDVPTKCISSNVTLDINASVLYI
DFEGRSDGESVRKILSQIKPKQLVLVRGSSEATDALADYCKSQSIVQGNIFTPRVGEVID
ATTESHIYQLRMRDHLVTSLMFSKARDIELAWIDGYLNMSTDKTDTGAMFEIEEGDAIDQ
EKRRLKALEDEKEAQDLIPTLESFPPTQVPVHTSVFINEPKLSDFKLVLLQEGIPCEFVA
GVLICNNAVAVRRNEAGRIQLEGALCDDYYVIRDLLYQQYAIV
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atgacatctatcatcaagctacatgtattctcggggtcacaaggagagagcccgccctgc
tacatgctgcaagtggatgagttccgcttcctccttgactgtggctgggatgaggactac
agcatggaccacatccgagaactcaaacgccaccttcaccagatagatgcagtgttgttg
tcatatcctgaccagcaacacttgggtgcagtcccatacctcgtgggcaaagctggtctc
tcctgccccatatactcaactattccagtgtacaagatggggcaaatgttcatgtatgac
ctgttccagtctcgtcacaacactgaagactttgatatgtttacattggatgatgtggat
gctgcctttgacaagatcattcagttgaagtactcacaaactatcacactcaaaggcaaa
ggccatggtctgcagataacgcccctagctgcaggtcacatgatcggaggcacaatatgg
aagatcgtcaaggatggggaggaggagattgtgtatgctgtagactacaatcacaagaaa
gaaagacatttaaatggctgcgtgctggagatgttcaacaagccgtcgctgatgatcact
gattctttcaatgcaacatacaaccaacctaggagacggctaagagatgaacagctcatg
accactatcctacagacaatgaggaatgatgggaatgttttggttgctgtggatacagca
ggaagaatgctggaacttgcacagttactggatcagatgtggaggagtgctgagtcaggc
ctctcaccctactcccttgctctcctcaacaatgtcagctttaacgtggtcgagtttgcc
aagtcacaggtggaatggatgagtgacaagatcatgcgagcgtttgaggacaaccgcagt
aacccattccagttcaagcacctcaaactgtgccacaacctggcggagttggccagagtg
ccggaacctaaggttgttcttgccagcacccctgacctacagtgtggcttctcaagagac
ttgttcacagcatggtgtaccaatgccaaaaacagcatcatcctgaccaacagaacctct
cctgggacactggctcgatggctgatagacaaccagcagaacaagactgtcactatggag
gtgagacgacggatccgtttggatggacctgaactagaagattacatgaagaaaaaacag
gagaagaaagctcaagaaaaactcaagaagacagagctgtctaagttagatctggctgat
gagtcgagtgatgaaagtgaagcagagatggaggtagaggcctatggcagcaaacctgga
aagggcaagcatgacctcatgattcaaggggagggaaagcaaaggagtggtttcttcaag
caagccaagaagtcctacccgatgtaccctttccatgaagaaaagattaaatgggatgag
tatggagaaatcatcagactggaagattacacaatacttgatgtggtggcgcctgacgag
gacatggccacgaatgagacggcaactgctgatgacacaatgcaagatgtctctgatgtt
ccaacaaagtgcatctcctccaatgtgacgcttgatattaacgccagtgtactctacata
gacttcgagggccgatctgatggtgaatcagttcgcaaaatattaagtcagatcaaacca
aaacagctggtgctggtgcgagggtcatcggaggccactgatgcgcttgcagactactgc
aagtcccagtcaatagtccagggcaacatattcacccccagggtgggcgaggtgattgat
gctacaacagaaagtcacatctaccagctgaggatgagagaccacctggtcacctccctg
atgttttctaaggccagggacatcgagctggcctggatagatggctatctcaacatgtcc
actgacaagacagatactggcgctatgtttgagatcgaggaaggcgatgccattgaccaa
gagaagcgcagacttaaagccttagaggatgagaaggaagctcaggatctgatccctaca
ctggaatccttccctccgactcaggtcccagtgcacacctcggtgttcatcaatgagccc
aagttgtccgacttcaagctggtgctgcttcaagaaggaatcccctgcgagtttgtggct
ggagtgctcatctgtaacaatgctgtggcagtcaggaggaacgaggctgggaggatacag
ctagagggtgctctctgtgacgactactacgtgatccgggatctgttgtaccagcagtac
gccattgtgtga
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