Haliotis rufescens (red abalone): 124144977
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Entry
124144977 CDS
T07893
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124144977
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrf03019
]
124144977
Enzymes [BR:
hrf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124144977
Messenger RNA biogenesis [BR:
hrf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124144977
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
ATPase
AAA_16
AAA_23
AAA_22
AAA_14
Myosin_head
AAA_19
TsaE
PhoH
ABC_tran
NB-ARC
Motif
Other DBs
NCBI-GeneID:
124144977
NCBI-ProteinID:
XP_046370556
LinkDB
All DBs
Position
Unknown
AA seq
1094 aa
AA seq
DB search
MIRRLLIAADASKLTRFLSTADMYGRGRGQRSDSWGGRSGRGGRSYGGRRHDDDGDRHGR
RDRGHQRHGGRGWRDSNVDGSNDGDSRGGGSGGGGRPPPGLRGRDIGMWYARRSKDKKEK
QDREQRPTVAMDSSRENHIRDLLDKINSSEPRVDMFDNQHTGPASQSNSLDNKAWASSSP
PDMFDNPYGEASSRPQTAGKGASAFPKTRDLRDDKEEEDTEEEVPSMSAIIEYSKAEDEY
PLAESSVDFEGAKYADEPWDQLGHLSDSLLKEYNEKQLQPNFRKMMTFREKLPSFEMREK
LMDDINNNQVVVISGETGCGKTTQVPQFILDNYIKNGIGSQCRVICTQPRRISAISVAER
VAAERCERCGGTDSSVGYQIRLEYKLPRLNGSILYCTTGIVLKFLESDPLLQRATHIVLD
EIHERDLQSDFLMIILKDILPRRPSLKVILMSATLNAAMFSKYFNDCPQLNIPGYTFPVE
EFLLEDVIEMLKYQPDSSQPQRRRPRGKRSREADEERWNFEAWCRNLEGSYSRSTITALQ
NMDFDKIDLDLIVSLIRHIALKKSEGAILVFVPGWEEISKIHKMMQADRMFTSDKFRIIP
LHSLMPTVNQREVFDRPAPGVRKVVIATNIAETSITIDDVVYVIDCGKIKVKDFQPENNL
STLEAKWVSKANSKQRRGRAGRVQPGVCYHLYTGLKWTEVDDYLPPEILRTRLEELCLHI
KLLKLGKIEPFIAKAIQQPSMEALHRAIITLQNLNALDKDENLLPLGYHLARMPVDPHTG
KMILFGAMFCCLDPILTVAASLSFKDAFFIPLGKEEEADRARKALSEDSKSDHVMLIKAY
EGWERAKSRGNDRDYCWQNFLSPSTLRLLKDMKGQLAQLLLELGFIKNKNPKDLAANVNS
NNYGLVKAVLCAGLYPNVAKVAKCPRPGAPPYKMVSLYTRHEGKADVHPKSVNSRENFFE
SKWMVFYHKLKTTKVYVHDCTMVSPYPLLFFGGDIGYGKDGDQDTVSVDDWIVFKASPTT
AQLVKDLRRELDKLLEHKITHPGPTSWSEAEKEGALMRAISDLITTDEDQFQSGALPAHS
TDSQHHRRNRHKRW
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgatcagacggctgctcattgcagctgacgcctcaaaattaacgagattcctgtcgact
gcagatatgtacggccggggtagggggcagagaagtgactcctggggaggacgctcaggc
agaggggggcgaagttatggaggcaggaggcacgacgatgatggggacaggcatggcagg
agggaccgaggtcaccagagacatggcggcagaggctggagggatagcaatgtggatggc
agcaatgatggtgatagtcgtggcggcggcagtggcggcggtggtcggccccctcctggt
cttcgaggtcgagacattggaatgtggtacgcaagacgaagcaaggacaagaaggagaag
caggacagagaacagaggccaacagttgccatggattcaagcagagaaaatcacattcgt
gacctccttgacaaaatcaactcttcagagccacgtgtagacatgttcgacaaccaacac
acagggccagcttcacaatccaactcgctcgacaacaaagcctgggcatccagctctcct
ccagacatgttcgacaacccgtacggcgaggccagcagccggccgcagactgcagggaaa
ggagcaagtgcattccccaaaactagagacttgagagacgacaaggaggaagaagacaca
gaagaggaagtgccgtccatgtcggccattatagaatattcaaaggcagaggatgaatac
ccactggcagagagctctgtggattttgaaggtgccaagtatgctgatgagccgtgggat
cagctaggtcatctgagtgacagtctcctgaaggagtacaacgagaaacagctgcagccc
aacttccggaagatgatgacattcagggagaagctgccatcatttgaaatgagggagaaa
ctgatggatgacataaacaacaaccaggttgttgtgatcagcggtgaaactggctgtggt
aaaacaacacaggtcccccagtttatcctggacaactacatcaaaaatgggatcgggtct
cagtgccgagtcatctgtacacaacccaggaggatcagtgcaatatccgtggcagagaga
gtggcggcggagcggtgtgagaggtgtggggggacagacagcagtgtggggtaccagata
cgtctcgaatacaagttaccgcgattgaatggctccattctgtactgcacgactgggatt
gtcctcaagtttcttgaatctgatccgctgctgcagagagcgacccacattgtcctagat
gagatccatgagcgtgaccttcagtctgacttcctcatgatcattctcaaggacattcta
cctcgccgaccttcactcaaggtcatactgatgagtgccacactaaatgcagcaatgttc
tccaaatacttcaatgactgccctcagctgaacatccccggctacacattccctgtggag
gagttcctgttggaggacgtcatcgaaatgctgaagtatcagccggactcaagtcagcca
cagcgtcggcgacctcgggggaagcgtagccgtgaggcggatgaagagcggtggaacttt
gaggcctggtgcagaaacctggaggggagctactcccgctccaccatcaccgccttgcag
aacatggactttgacaagatcgacttggacctgattgtctcccttatcaggcacattgct
ttaaaaaagtcggagggagcgatcctggtgtttgtccctggctgggaggagatcagcaaa
atccacaagatgatgcaggcagacaggatgttcacctcagataagtttcgcatcatccca
cttcactcactcatgccaaccgtcaatcagagggaggtgtttgataggccggcacctgga
gtcaggaaggttgtcatagcaaccaatattgctgaaacaagcattactatcgacgacgtc
gtgtacgttatcgactgcggcaagatcaaggtgaaggactttcagccagagaacaacctc
agcaccctggaggccaagtgggtctccaaggccaactcgaaacagaggcgtggccgagcg
ggcagagttcagcccggtgtgtgctaccatctgtatacgggtctgaagtggacggaggtc
gatgattacctccccccagagattctgcggactcgacttgaggaactttgcctgcacatc
aagctgttaaagttggggaagattgaaccgttcatagctaaggctatccaacagccatct
atggaggcgctacacagggccatcatcacgctgcagaatttgaatgccttggacaaggat
gagaacctgcttcctctcggctatcatctggcgcgtatgccggtcgaccctcacacgggg
aagatgatcctgttcggcgccatgttctgctgtctggaccccatcctcactgttgctgcc
agcctcagcttcaaggacgccttctttatacctctgggcaaggaggaggaagctgaccgg
gcgcggaaggcgttgtccgaggattccaagagtgaccacgtcatgctcatcaaggcgtac
gagggctgggagagggcaaagtcccgaggaaacgatcgagactattgctggcagaacttc
ctgtctccgagcacattgcggctgttgaaggacatgaagggccagttggcccagctgtta
ctggagctggggttcatcaaaaacaagaatccgaaagacctggcggccaacgtcaattct
aataactacgggctggtgaaggcagtgctctgtgcaggactttatcccaatgtagccaaa
gtggctaaatgtccgagaccaggggcaccgccgtacaaaatggtgtcactctacactcga
catgaaggcaaagccgatgtacatcctaagtctgtcaactccagagagaatttctttgag
tccaagtggatggtgttctaccacaagttaaagacgacaaaggtgtacgtccacgactgc
acgatggtgtcgccatatccactgctgttcttcggaggagacattggttatgggaaggat
ggggaccaggacactgtgtctgtagatgactggatcgtcttcaaagcctcacccaccaca
gcacaactagtcaaggacctgcgccgtgagttggacaagttactggagcacaagatcacc
cacccaggacccaccagctggagtgaggcggagaaggagggggctctcatgcgggccata
tcagacctcatcactacagatgaagatcagttccagtccggggcactgccagcacattct
acagactctcagcatcacagaaggaacagacataaacgttggtga
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integrated database retrieval system
