Haliotis rufescens (red abalone): 124147808
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Entry
124147808 CDS
T07893
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1-like
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
hrf
Haliotis rufescens (red abalone)
Pathway
hrf03020
RNA polymerase
hrf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124147808
09124 Replication and repair
03420 Nucleotide excision repair
124147808
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrf03021
]
124147808
03400 DNA repair and recombination proteins [BR:
hrf03400
]
124147808
Enzymes [BR:
hrf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124147808
Transcription machinery [BR:
hrf03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124147808
DNA repair and recombination proteins [BR:
hrf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124147808
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
Motif
Other DBs
NCBI-GeneID:
124147808
NCBI-ProteinID:
XP_046374548
LinkDB
All DBs
Position
Unknown
AA seq
1943 aa
AA seq
DB search
MAFVGDSNAPVMLVKKVQFGILGPDEIKRMSVTEGGIRYSETQEGGRPKIGGLMDPRQGV
IDRMSRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTIKVLRCVCFFCSKMLVDSTGP
KIKDILTKSKGHPRKRLAHVYDLCKSRKICEGGDEMDKRNEEEDPTGEKKGHGGCGRYQP
KLKRTGLEVVAEWKNVNEESQEKKLILSAERVLEIFKRISDEECMILGMDPRYARPDWMI
LTVYPVPPLAVRPAVVMFGSARNQDDLTHKLADIVKANNQLRRNEQNGAAAHIITEDTKM
LQYHCATLVDNELPGLPRAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDFSARTVITP
DPNLRVDQVGVPRTIAQNLTFPELVTPFNIDRMQELVRRGANQYPGAKYIIRDNGERIDL
RFHPKSSDLHLQVGYKVERHMQDDDVVIFNRQPTLHKMSMMCHRVKVLPWSTFRLNLSVT
TPYNADFDGDEMNLHLAQSLETRAEIHNLAAVPRMIITPQANRPVMGIVQDTLCAVRKMT
KRDVFLDRGDVMKLLMFMPTWDGRLPIPAILKPRPLWTGKQIFSIVIPGRVNVTRTHSTH
PDDEDKGPYKWISPGDTKVLIEDGELICGILCKKTLGATSGALLHIVFMELGFDTAGKLY
GNIQTCVNNWLLIEGHSIGIGDTIADPETYIEIQETIRKAKTEVIEVIEKAHNDELKPSP
GNTLRQTFENQVNRILNDARDKTGSKAQKSLSEYNNFKAMVVAGSKGSKINISQVIACVG
QQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPSEFFFHAMGGREGLID
TAVKTAETGYIQRRLIKAMESVMVKYDGTIRNQVEQLVQLRYGEDGLDATHVEFQSMPSL
KPSNRAFEKKFKFEPTNERDLRKCLSEEVIKDVIGDPAVISELEREFEQLREDRNALRQI
FPTGDGKIVLPCNLMRMITNAQKIFRINTRKPADLHPIKVVEGVRELCRRLIVVAGEDRL
SVQANANATILMKILVRATLCAKRVANEFRLSAEAFEWIIGEIETKFLQAQAHAGEMVGA
LAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINISKKPKTPSLTVYLLDQAAR
DAEKAKDVLCRLEHTTLRKVTANTAIYYDPDPMNTVIVEDQEWVSVYYEMPDFDASRISA
WLLRIELDRKRMTDKKLTMEQISEKITAGFGDDLNCIFNDDNAEKLVLRVRIMNSDESKN
EEEEMADKMEDDVFLRCIEANLLSDMTLQGIEAIAKVYMHLPTTDDKKRIFITDEGEYKA
AAEWILETDGTALMKVLSERDIDPIRTYTNDIVEVFATLGIEAVRKAIEKEMNHVISFDG
SYVNYRHLALLCDVMTAKGHLMAITRHGINRQETGALARCSFEETVDILMEAAAHGEHDP
MKGVSENIMLGQLAKIGTGCFDLLLDAEKCKYGMEIPTAGGSGMMSGAGTGMFFGSVGSP
VSGMSPQMTPWNQGATPAYASAWSPGIGSGMTPGQAGFSPSAASESGFSPGYSPAWSPQP
GSPGSPVSPYIPSPRGAMSPSYSPASPSYMPSSPAMTPQSPGYSPTSPSYSPSSPGYSPT
SPKYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPNFSPQS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPSSPSYSPSSPKYTPTSPSYS
PSSPSYSPSSPQYSPTSPKYSPTSPSYSPSSPKYSPSSPNYTPTSPQYSPQSPEYSPSSP
QYSPSSPQYSPSSPTYSPTSPKYTPTSPTYSPTSPRYSPTSPTYTPTSPKYSPTSPTYTP
TTPKYSPTSPRYSGQGEEESDED
NT seq
5832 nt
NT seq
+upstream
nt +downstream
nt
atggcgttcgtgggagactcgaatgccccagttatgctggtgaagaaggtccagttcgga
atattgggaccagatgagattaagcgaatgtctgtgaccgaggggggcatcagatactcc
gaaacccaggagggtggccgacccaagatcggcggcctgatggacccacgacaaggagtt
atagacagaatgtcccgatgtcagacctgtgcgggcaacatgacagaatgtcccggacac
tttgggcacattgagcttgccaaaccagtatttcatgttggatttcttgtgaaaacaatc
aaagtgttgcgatgtgtctgtttcttctgctccaagatgctggtggattccactggtccc
aaaataaaagatattctcaccaaatccaaaggccatcctcgcaagcgacttgctcacgtg
tatgacttgtgcaagagtcggaaaatttgtgaaggtggtgatgaaatggacaaacgaaat
gaagaggaggatccaacaggagaaaagaagggccatggtgggtgcggcagatatcaaccc
aaactgaagagaactggtcttgaggtggttgcagaatggaaaaatgtgaatgaggagtcc
caagaaaagaaacttattctgtcagcagaaagagtgcttgaaatcttcaaaagaatttct
gatgaagagtgtatgattcttggaatggacccaaggtatgctcgtcctgattggatgatt
ctgacagtgtatcctgtgccgccattggctgtgagaccagctgttgtcatgtttggctcg
gcaaggaatcaggatgatttaactcacaagttggctgacatagtgaaggccaacaaccag
cttcgacgtaatgaacagaacggagctgcagctcacatcataactgaagacacaaaaatg
ttgcagtaccactgtgccacactggtagacaacgagctgcccggtttgcccagggcagta
caaaagtcaggccgtcccctgaagtcagtaaaacaaagattgaagggaaaggaaggtcga
gttcgaggaaacttgatgggaaagcgtgtggacttctctgcacgtactgtcattacgcca
gatcccaatctgagagtggaccaagttggtgttcccagaaccattgcacagaacctaaca
ttcccagaacttgtcacaccattcaacatcgacagaatgcaggagctggtacgtcgtgga
gccaatcagtatcctggagccaagtacatcatccgagataatggagagaggatcgatctc
aggtttcatcccaagtcgtcagatctccatcttcaagttggctacaaggtggagagacac
atgcaagatgacgacgtggtcatcttcaaccgacagcccactctccacaagatgagtatg
atgtgtcacagggtcaaagtgttgccatggtcaactttccgtctcaatctcagtgtaacc
actccctacaatgcggattttgatggtgatgagatgaaccttcacttagcgcagtcactt
gaaacccgggctgagattcataacctggctgctgtccctcgtatgatcatcaccccccag
gccaacaggcctgttatgggtattgtgcaggacacgctgtgtgctgtcaggaaaatgaca
aagagagatgtctttttagacagaggtgacgtgatgaaactgctgatgttcatgccgaca
tgggacggccgactgccgattccagccatcctcaaacccagacccttatggacagggaag
caaatcttctccatcgtcatccctggtcgagtgaatgtgacgaggactcacagcacacat
ccagatgatgaagacaaagggccgtacaaatggatatctcccggagacaccaaggtcttg
atagaagatggtgagttgatctgtggaatcttgtgtaagaagactcttggtgccacatct
ggagctctcctgcatattgtcttcatggaacttggctttgacacagcaggaaaactgtat
ggtaacattcagacatgtgtcaacaactggctgcttattgaggggcacagcataggaatt
ggagacaccattgctgacccagagacatacatagaaattcaggagaccatccgtaaagcc
aaaacggaggtgatagaggtcattgaaaaagcccacaacgacgagttgaagccttcgccc
ggtaacacacttaggcagactttcgagaatcaggtcaacagaatcctgaacgatgctcgt
gacaagactggaagtaaggctcagaagtccctgtctgaatacaacaacttcaaggctatg
gtggtggctggatccaaaggatcgaaaatcaacatctctcaggttattgcctgtgtggga
cagcagaatgtggagggtaaacgtattccattcggtttcaaacatcggacactgccgcac
ttcatcaaggatgactacggtcccgagtctcgaggctttgttgagaactcctatcttgcc
ggtttgactccttctgagttcttcttccacgccatgggcggaagagagggtctcattgat
actgctgtaaaaactgcagaaactggttacatccagcgtcggttgatcaaggctatggag
agtgtgatggtcaagtatgatggcacaatacgtaaccaggtcgaacaactggtccagttg
agatatggagaggacggtctggacgccacacatgtcgagtttcagagtatgccttcactc
aaaccatctaacagagctttcgagaagaagttcaagttcgaaccaacaaatgaaagggat
ttgaggaagtgtttgtcagaggaggtgatcaaggatgtgatcggtgacccagctgtcatt
tctgaactggaacgtgaatttgaacagttgagggaagacaggaacgccctgagacagatt
ttccccaccggggatggaaagattgtgttgccgtgcaacctgatgagaatgatcacaaat
gctcagaaaatcttccgaatcaacacaagaaaaccagcagatctacacccgatcaaagtt
gtagaaggtgttcgagagctgtgccgtcgactgatcgtggtggccggagaggacagactg
agtgtccaggctaacgccaatgccaccattctcatgaagattttggtgagagccacactt
tgcgccaaacgtgttgccaacgagttcagactgtctgcagaagcatttgaatggatcatc
ggtgaaattgagacaaaattcttacaagctcaggcccatgcaggtgagatggtgggagcc
ctggccgcacagtctctgggagaacctgccacacagatgacactgaacactttccattat
gctggtgtgtctgccaaaaacgtaaccctgggtgtacctcgtctgaaggaaatcatcaac
atctccaagaagcccaagaccccctccctgactgtgtacctcctggaccaggcagcaagg
gatgcagagaaggccaaggatgtactgtgtcgacttgagcacaccacgttgcggaaggtg
acggctaacacagccatctactacgaccccgaccccatgaacactgtgattgtggaggac
caggaatgggtcagtgtgtattacgagatgcccgacttcgatgcttccaggatttcagcc
tggctgctccgcatcgagttggacaggaagcgtatgacagacaagaaactcaccatggaa
cagatctcagagaaaatcactgcaggttttggagatgatctgaactgcatcttcaacgat
gataatgctgaaaaacttgttctgagagtccgaatcatgaactctgatgaaagcaaaaat
gaggaagaggaaatggcagacaagatggaggatgatgtgttcctccgatgtatcgaagcc
aacctcttgtctgacatgaccctccagggcattgaagctattgccaaggtgtacatgcat
ttgccaaccactgatgacaagaagcgtatcttcatcaccgatgaaggagagtacaaggct
gctgctgagtggattctggagactgacggtaccgccctgatgaaggtgttgagtgaacga
gacatcgaccccatcaggacatacactaatgacattgtggaggtgtttgctaccttggga
attgaggctgtacgaaaagccattgagaaagagatgaaccacgttatctcctttgatggt
tcctatgtgaactaccgtcacttggcacttctgtgtgatgtgatgacagccaagggtcac
ttgatggccatcacacgtcacggtattaacaggcaggagactggtgcactggcaagatgc
tcctttgaggaaacggtggacatcttgatggaggcagcagcccacggcgagcacgacccg
atgaaaggtgtgtctgagaacatcatgctgggacagctggccaagatcggcactggctgc
ttcgacctgctcctggatgcagagaaatgtaaatacggcatggagatcccaacagctggt
ggctcaggaatgatgtcaggtgcaggaactggtatgttcttcggcagtgtgggcagtcct
gtcagcggcatgtctccacagatgaccccctggaaccagggagccacacccgcttacgcc
agtgcctggtcccctgggattggcagcggcatgacccctggtcaggcaggcttctctccg
tcggctgccagcgagagtggcttcagtcccggctacagccctgcctggtcaccgcagccc
ggctccccaggctcgccagtcagtccctacattcccagtccacggggcgccatgtcgccg
agctactcaccagcgtcgccatcctacatgccaagctcgccagccatgacccctcagagt
cctggctactcaccaacaagtccgtcatactcgccatcaagtcctggttattcaccaact
tccccgaaatacagtccgacttctccatcttattctccaacaagtccaagctacagtcca
acttctccatcctactctcctactagcccatcctattctccaacaagtcccagctacagt
cccacatcgccatcctactcccctaccagcccatcctacagtccaaccagcccatcatac
agcccgacctctccatcctacagtcccacatcaccctcctatagccctacaagcccctcc
tattctcctaccagcccctcctattcccccacaagcccatcctactctcctaccagtcca
agctacagcccaactagcccttcatattctccaagctctcctaacttcagcccccagtca
ccttcctactctccgaccagcccatcctatagcccaacaagcccctcgtactcacccacg
agtccaagctacagcccaacctccccaagctactctcctactagtccttcctacagcccc
agcagtcccagctattcgccaagctcacccaaatacactccaaccagtccatcttattct
ccaagcagcccttcctactccccaagctctccacagtactctccaacatcccccaaatac
agcccaacgagcccctcctactccccaagcagccccaagtattccccctcgtcccccaac
tataccccaacctccccccagtacagcccccagtctccagagtacagcccctcctcccct
caatacagtccaagctcaccgcagtactctccctcctctcccacctactccccaactagt
ccgaaatacaccccaacctccccaacatactctcctaccagccccagatactccccaacc
tcacccacgtacactccaacaagccccaaatactctccaacatcccccacatacacccca
accacacccaagtactccccgactagcccacgttactcaggccaaggtgaggaagagagt
gatgaagactag
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integrated database retrieval system
