Haliotis rufescens (red abalone): 124150101
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Entry
124150101 CDS
T07893
Name
(RefSeq) focadhesin-like
KO
K27498
focadhesin
Organism
hrf
Haliotis rufescens (red abalone)
Brite
KEGG Orthology (KO) [BR:
hrf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrf03019
]
124150101
Messenger RNA biogenesis [BR:
hrf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124150101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Focadhesin
DUF3730
INTS7_N
Motif
Other DBs
NCBI-GeneID:
124150101
NCBI-ProteinID:
XP_048253978
LinkDB
All DBs
Position
Unknown
AA seq
1800 aa
AA seq
DB search
MEDIKRRLEVKHPAIQIQAVWRLYSDVVKKSGKATIDASTPEILELKALWDSCSSPDRIV
SEASGQALVKLVVLKKAEFTYVINSLLNIVPSARSLQGVVPAISQLLTLQAEAVVEAGHS
YECPYSIRTPPHPFITVLTNRPESWLLLQQQVYAICCHDNDRIRQISIRVISPFLKFVFL
EPQQTAQYQPMRNGLQRALIDVCFDTTDSGAKQVVSFLASILHCFQMQTFDQLAYLTVFL
LDILRTATRLTWSPTEMSSLAGLVSCCLGTLQPCWTMGIDSTRLEKALLLCVEKHPQAVC
CEKNIAALSELLLSAASAGCLCLLKIVNLLLISLDQCPSALAAMLVQPLLQILSAPTSVE
AMSTCRKQVMVAAADDLATIEQIIQNSVKDKSREESVILPSATPDGYTSQMYVSLAWTFS
RSETTAGVWLESVSTNIARSKMVPLNVTNMAAALFVVSSSKKLSEQALATMVEIAKHDYS
QAPGLLPLLLYRLGREPDPEMKLTILEAIPQLATHKFCIAPILKTIQLMSNSPRLRAISI
RLMTSLWKLQDRTFPQLLHLLTDISPGRIVPGGIDEVTLAKAAAIRDICQLRPGQHGSDL
LSPISDILNSHSGEEGSAACALVLEGLASLCEAEVINIQSAWAVLADKLTQDCRPPVVEK
ICDLFSLVASLTEKTPEFENFQLEVVRNLWLYCHSDNSTIQGAALRALSAFAPDQFLVSS
LPAHVTEDLREQAAQIAAQQDDPDLTIDQILTFVPGVCFTRLLKTLHAQVLEDYEVFLSS
MIGKEVESLPRGIYHSSLRRQGAAANQGKAVSSIPGFILSQYEKTNQPGLRPGLASGLLF
CYDPPVEVGRDGRPRRHYIVSHGKNYQQMFNTLLSEVPVQPSEWHRCMLMPQAWTSFVDR
LFTAMLEAKKADLEMEIKRGDIESSDAKLAQDTAWLWVRDAIADLIKTASRGNPTRQGNS
VLALAGLAVSASRHATGLDEESLKAAEDTCQHLSHSHWLTVAMDTIMCLMEVSFKPKGKI
LGLCQQRTAGDKLPASLLARSSACVALSQLVPIFITMDSDRIYQVISMATDRLPGQPGCE
ESPVLQFHYGLGLGMFLGRLFEEHISDVGGAKGMIDIWKTMDMLESCCLSKDLENRSGCL
LGVGLAVSGLCEEGKTESRAHVSAVHDKLTMLMEETPSTDSSYQAVCVAVSCISGRAFSA
NILQIERVGAVVDSLTRAHAQNPEVTGVCLALGALCYNLSKVGHPTIGQLRTKLVHDWLK
GLASEETPPRQKVSTLNGLMALIGSERTLVSVQGSGTSLLGTDVDADSVIKMATSVVAKS
SDLGIQSNSAWMLGHLYLSACAITETRASVPPSYAYLPESSILRALVDLLIEAGKRGPEV
IPPEYVKVALTAVQEDVKQVLPPVNWAGVLSPFMRVNFGTSVRCLCFKMAVSQSLSAPTA
AMFISSWLTPPLFNSLEMECKEFLYQSLPYLIKSVGPAILQTFLERGCMDPFTDNDMPMC
VCVLRGLNLALQVQDPPESVTKILYSATQVIYKAMTPTLQVALYCQMSECLSNLPDEILD
EVTLEDFSEVRTFVKGTFVRCYLIANGRQPVALLNSCIDAIIHSQHSEKTVLLHLLAHCF
QQMAGCSTDYTRPVNRTQWLLELLGHIRNIAIGNTTLPDQAPPHIEVMQCAVEVVARAIC
LWTNSAAGAISGVEPSLFRLTTGDETLGGDNWVADYAKMLPDCLDFLPGCIARLEREPWD
QIMSKAIDWLLTLSESSTEVVSPVSRKQTRESLYMLRHCKDFRKAVVWSRVFSPDVSASG
NT seq
5403 nt
NT seq
+upstream
nt +downstream
nt
atggaggacattaagagacgcctggaggtgaagcatccggcaatacagatacaggctgtg
tggcgactgtactcagatgtcgtgaagaagtccgggaaggccaccattgatgcgtctacg
ccagagattttggagctgaaagcattatgggatagctgtagctcacctgatcgcatcgtg
agtgaagcaagtggccaggctctggtcaaactagtggtcctcaagaaggccgagtttacc
tacgtcatcaatagtctgctgaacattgtaccatcagccagaagccttcaaggagttgtt
ccagctatttcccaactgttgacgttacaagcagaggcagtcgttgaggccggacacagc
tacgagtgcccctactcaatcaggactcctccccatccattcatcactgtcctgaccaac
agaccagaaagttggctgctcctacaacagcaggtgtatgcaatctgttgccatgacaat
gacagaatcagacaaatatccatcagagttatctccccctttctgaagtttgtatttctt
gagcctcagcagacggctcagtatcagccaatgagaaatggcctacagagagcgctcatt
gatgtctgctttgatacaacagacagtggagccaaacaagtggtttcatttttggcatca
attcttcattgcttccagatgcagacctttgatcaactggcctacctgacagtgttcctc
ctggacattctgaggaccgccaccagactgacctggtcacccacggagatgtccagcctg
gccgggctggtgtcctgctgcctgggcaccctacagccatgctggacaatgggcattgac
agtaccaggctagagaaggcattgctgctctgtgtagaaaaacacccccaggctgtgtgt
tgtgagaagaacattgctgccttgagtgagctgctgctgtctgctgcctcagcagggtgc
ctatgtctcctgaagatcgtcaatctcttgctgatcagccttgaccagtgtccgtccgcc
ttggcagccatgttggtccagcctctccttcagatcctgtcagcaccaacttctgtggaa
gcgatgtccacttgtcgcaaacaggtcatggtagctgctgccgatgacctcgctaccata
gaacagatcatccaaaactctgtgaaggacaagtctcgagaggagagtgtcatcctgcct
agtgccacccccgacggctacacgagccagatgtatgtgtcccttgcctggaccttcagc
cggagcgagaccactgctggtgtctggctggagagcgtctctaccaacattgccagatcc
aagatggtgccgctgaacgtcaccaacatggccgctgccctcttcgttgtctcatcctcc
aagaagctgtctgaacaggctctggcaacaatggtggagattgccaagcatgattactca
caggctccaggtctacttcccctcctgctgtaccggctgggccgggagcctgaccccgag
atgaagctgaccatcttggaggccataccccaactggccacacacaagttctgcattgct
cctatcctgaagacaatccagctgatgtcaaactctcctagacttcgagctatatccatc
agactgatgacttcgctttggaaacttcaagaccgcaccttcccacagctcctgcacctg
ctcacagacatctcccctggacgaattgttccagggggcattgacgaggtcactctcgcc
aaagctgcagccattcgagacatctgtcagctgagacctgggcagcatgggtcggacctc
ctgtctcccatctcggacatcctcaacagccacagtggggaggagggcagcgccgcttgt
gccctggtcctggagggtctggctagtctctgtgaggcagaggtcatcaacatccagtca
gcctgggccgtcctggcagacaagttgacccaggattgtagaccaccagtcgtggagaag
atctgtgacctattttctcttgtggcctcactgacggagaagacccctgagttcgagaac
tttcagcttgaggttgtgcggaacctgtggttatactgtcacagtgacaacagcaccatc
cagggggcagcactgcgagcactgtcagcgttcgccccggaccagttcctcgtcagctcc
ttgcctgcacatgtaacagaagacctccgtgagcaagcggcccaaatagcagcacagcaa
gacgaccccgacctgaccattgaccagatcctcacatttgtacccggcgtctgcttcaca
cgtctgctcaagactctccatgcgcaggttctcgaagattatgaagtatttttatcatcc
atgattggcaaagaggtagaaagtctgccaagaggcatttaccactcgtcactacggcga
caaggagctgcagccaatcaggggaaagcagtcagcagtatcccagggttcatcttgtct
cagtacgagaagaccaaccagcctggacttcgccctggactagcatctgggttgctgttt
tgctatgatcctccagtggaagttggccgcgatggcagaccaagacgtcattacatcgtc
tctcacggcaaaaactatcagcagatgttcaacaccctcctctctgaggtgccggtgcag
ccctcggagtggcaccgatgtatgctcatgccccaagcctggacctcctttgtggacaga
cttttcacagccatgttggaggccaagaaagctgatctagagatggaaataaagagagga
gatattgaatccagtgatgccaagctagcccaggacacagcatggctttgggttagagat
gccattgcagatctcataaagacagcatccagaggcaatcctacaaggcaagggaactca
gtcctggcactggctggcctcgcagtgtctgcatcacgacacgctaccggtctggacgag
gagtcgctgaaagctgctgaagacacgtgtcaacatctcagtcattctcattggctgact
gtcgccatggataccatcatgtgtttgatggaagtctcattcaagccaaaagggaagatc
cttggcttgtgtcaacagagaacggctggtgacaaactccccgccagtcttctggccagg
tcctctgcctgtgtggccctctcacagctcgtgcccatcttcatcactatggattcagat
agaatctaccaggttatttcaatggcaactgacaggttgccagggcaaccaggatgtgag
gaatcgccagttcttcagttccactatggcctgggactgggaatgttcttgggcagactg
tttgaagaacacatttctgatgttgggggagctaagggcatgattgacatatggaagacc
atggacatgttagaaagctgctgtttgtccaaggacttggagaacagatccggatgtctg
ctgggtgtgggtctggctgtgagtgggttgtgtgaggaggggaagaccgagtcaagggcc
cacgtgtctgcagtgcacgacaagctgaccatgttgatggaggaaacgccatccacagac
tcctcatatcaggccgtctgtgtcgcagtctcctgcatcagtggccgagcattctccgcc
aacatcctccagattgagagagtcggtgctgtggtggacagtctcactcgggcacatgca
cagaacccagaggtaacaggtgtctgtctggcactgggggccttgtgttacaacctcagt
aaagtgggacatccaactattggtcagctgcggacaaagctggttcatgattggctgaaa
ggtcttgcatcagaggaaaccccgccaagacagaaggtgtccacactgaatggtttgatg
gctctgattggctccgagaggacattggtgtcagttcagggcagtgggacatctctcctt
ggaactgatgttgatgcagatagtgtcatcaagatggctacttcagtcgttgctaagtcc
agtgaccttggcattcagagtaacagtgcttggatgctgggacatctctatctgtctgcg
tgtgccatcacggagacccgagctagcgtcccaccgagctatgcttacctgcccgagagc
agcatcctgcgggccctggtggatctcctcatcgaggctgggaagagaggacctgaggtt
atcccaccagaatatgtcaaggtggctttgactgccgtccaggaggatgtcaaacaagtg
ctgccacctgtaaactgggcaggagttctctcccctttcatgagagtcaactttgggaca
agtgtgaggtgtctgtgtttcaagatggccgtctctcagagtctgtcagctccaacagca
gccatgttcatctcatcgtggcttacaccgccacttttcaactctctggagatggaatgc
aaggagttcctgtaccagtccctgccctacctcatcaagtctgtgggccctgctatactg
cagacattcctggagcgcggatgtatggatcctttcactgacaacgacatgccaatgtgt
gtgtgtgtacttcgaggcttgaaccttgccctgcaggtccaggacccacctgaatctgtc
accaagatcctctactctgccacccaagtcatctacaaggctatgacgcctaccctgcag
gtggcgctgtactgccagatgtcggagtgtttgtccaacctcccggatgagatcctggat
gaggtaacactggaggatttcagtgaagtccggacattcgtgaaaggcacttttgtcaga
tgttacctcattgcaaatggccgccagcctgtagcgctactgaacagttgcatcgacgca
atcattcacagtcaacactcggagaagacagtgttgctgcacctgctggctcactgcttc
cagcagatggcgggctgttccaccgactacaccagacccgtcaaccgcacacagtggctt
ctggaactgcttggtcacattcgcaacatcgccattggcaacacaaccttgccagaccag
gcacccccacacatagaggtcatgcagtgtgctgtggaagtggttgccagggcgatatgt
ctgtggacaaactccgcagcaggagccatctctggtgtggagccatcacttttcagactc
accactggggatgaaacactagggggagacaactgggtggctgactatgcaaaaatgttg
ccagactgtcttgattttttgcctggatgcatagctaggctggagcgagagccctgggat
caaatcatgtccaaggcaattgactggttgctgacgctgtctgagagctccacagaagtt
gtctcccctgtctccaggaaacaaaccagagagtcgctgtatatgctccgacactgcaag
gacttcaggaaggcggtggtgtggtcacgagtcttcagcccagacgtcagtgctagtggc
tga
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