KEGG   Haliotis rufescens (red abalone): 125374013
Entry
125374013         CDS       T07893                                 
Name
(RefSeq) helicase-like transcription factor
  KO
K15711  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]
Organism
hrf  Haliotis rufescens (red abalone)
Brite
KEGG Orthology (KO) [BR:hrf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hrf04121]
    125374013
   03400 DNA repair and recombination proteins [BR:hrf03400]
    125374013
Enzymes [BR:hrf01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     125374013
Ubiquitin system [BR:hrf04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    125374013
DNA repair and recombination proteins [BR:hrf03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    125374013
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 RING_XB3-XBAT31 zf-C3HC4_3 zf-C3HC4_4 zf-RING_2 DEAD zf-RING_5 Prok-RING_4 zf-RING_6 zf-rbx1 U-box zf-RING_4
Other DBs
NCBI-GeneID: 125374013
NCBI-ProteinID: XP_048240654
LinkDB
Position
Unknown
AA seq 1349 aa
MDIVNLPTSISQEDLDMLRTWVTENPAFTEDFLLNEDSQASHVSDAEVLFGTLNTSIVKS
PRCDNINSHEAVRLRRESSIMGRRGTVSVYNAGNTKLGNLGPPLDEPLTTILDDGVARID
AMTLDLSGMGDQEVPLQLTLYGSAANRLKCQDILRGAEIEFERTTEPTPDMSPDMSLDRS
PETTSDRSPQIDLTRSPRVSLDRSPETATRLTEIDLTRSPEIDLTRSPDMSFDNSLDATF
DRPPDLLFNRPPEIPFARLQTIDSSSRPSLDVTPGPSFTSLPLFHDRVPGTSIDLTGPDL
DILPEPTVHMLPPRILDRLAQIDFSSSPEAALDSIAAINFGSNDQTEPVDLTTHDSTTEQ
LASWYTNFEPNPHIAVDSHREIVSHDEMNSDIDRVFETLNEGDKTSEQEPAEAVGTPLYP
HQKQALCWMMSRENGDHLPPFCEEKTSGEYRNTLLNFSTTERPPSIRGGILADDMGLGKT
LETIALIFTNFVHNQPLAVPVPGKPRRGKENKIPSEDTPEGTGTDPENKVKVENKVKVEN
NNDEMFQRLQKVDELVTKMEAEEQLSTSGTANPCTPTTDIPPPTDETKSGLLKLRLLKAD
SSNIENNNASDPGTETVEQRVPDTSDKEQKRPILSMTSPSRKAILIDFHEQPSKRKRRSL
SSPSKYEESKWRKLHLDRPPAEQESYSHPSSQDKVTDDSDRKTGEDVNMDDSGDSDTCMQ
DITDDVSKVKSEDVDTDVKHPICRSEAHPQNTCEETPLTFSDEDELPDVESKEEEEEEEE
EVCDADSDMKDFMTANHCDERGRTLSEDCDPRGTLIICPLSVMSNWQGQLEEHAHPNVHI
DVHLYYGNQRCKDVNLLKQKDVVITTYGILLSEFKEYLTTGLSPLMTIEWLRVVLDEGHC
IRNPKAKQTKAVLTLQSQRKWVLTGTPIQNRMLDLWPLISFLNVTPLNERHWWQSLLEKP
LQRGKRIAFKRVQHLMGNIAMRRTKNTLVEGEPLVKLPKREVYMERIKMSDEESRRYKSM
EEQGKVQIKNYVRNNMLLKKYILVLEIMLRLRQMCCHSYLLPANGYCLPSEDSDSEEEDS
EKKREKLVDRLKVISESEEECSVCVDVLKTPVILPCAHYFCQTCILNAIKHMEHSEKGSA
TCPLCRAPLSEDQIIDLPMQPEPQIYGDWKSSTKVDALMSALVNLRSEDPSEKSLVVSQF
TSFLTLIETPLRELKFRFVRLDGKMSAAHRMEAVNKFSDTEPGSPTIFLISLRAGGVGLN
LTAASRVFLMEPHWNPATEEQCFDRCHRLGQTKDVVITKFISEDTIEDRMLDLQEKKRML
MQQSFKKKQTTTERNEQRTRDIRNLMNIL
NT seq 4050 nt   +upstreamnt  +downstreamnt
atggacatcgtgaacctgccgacgtcgatctcccaggaggaccttgacatgctgaggacg
tgggtgacggagaatccagctttcactgaagattttctcctcaacgaggactcacaggcg
tctcatgtctcagacgccgaggtgctgtttggaactctcaacaccagcatcgtcaagtca
ccaagatgtgataacataaacagccatgaagctgtacgcctgaggcgagagtcaagcatc
atgggtagacgtggaacagtcagcgtttacaacgccggaaacaccaaacttggcaacctc
ggaccaccgcttgatgaacctttgaccaccatcctagatgatggtgttgctagaattgat
gcaatgacacttgacttgagtggtatgggtgaccaggaagtgcctctccagctcacactc
tatggaagcgctgctaacagactcaagtgccaagacatacttcggggagctgagatagag
tttgaaagaactactgagccgacccctgacatgtcacctgacatgtcccttgacaggtca
ccggagacaaccagcgacaggtcacctcagattgacctgaccaggtcaccccgagtgtcc
cttgacaggtcaccagagacagccaccaggttaactgagattgacctgaccaggtcacct
gagatcgacctgaccaggtcacctgacatgtcctttgacaattcattggatgcaaccttt
gacaggccgcctgatttactctttaatcggccgccagagataccgtttgccagactacag
actattgacagttcatctcgcccttcccttgacgtcacgcccggaccaagcttcaccagc
ttaccactattccacgacagggtacccgggacatcgattgacctgaccggaccagacctg
gacatattgcccgaaccaactgtacatatgctacccccaagaatacttgaccgtttagct
cagatagatttttcaagctctcctgaggcagccttggactcaatagcagcaataaacttt
ggttcaaatgaccaaactgagccagttgatctcacaacacatgactcaacaacagaacag
ttggcatcctggtacactaatttcgaacccaacccgcatatagcagtggacagccatcga
gaaattgtatcccatgatgagatgaacagtgatatcgaccgggtgtttgagactctcaat
gaaggagataagacttcagaacaggaaccagcagaggctgtgggaacgcccctgtacccg
catcagaagcaggccctgtgttggatgatgagcagggagaatggcgaccacttgccacca
ttctgtgaggagaagacaagcggggaataccgcaacaccctgctcaacttttcaacgaca
gagagaccacctagtatcaggggaggtattctggctgatgacatggggctggggaagacg
ctggagacgatcgccctgattttcaccaactttgtccacaaccaacctctggctgttcct
gtgccaggcaaacccagacgcgggaaagaaaataagattccgtcggaggacacacctgaa
ggtacaggcactgaccctgaaaacaaggtgaaggtcgaaaacaaggtgaaggtcgaaaac
aacaacgatgagatgttccaacggcttcagaaggtggatgagcttgtcacaaagatggaa
gcggaggaacaattgtcaacttcaggaactgctaatccttgcacacccaccactgacata
ccaccgccaactgatgagactaaaagtggtttattaaagctacgtcttctgaaagcggat
agttctaatattgagaacaataatgcaagtgatccagggacggaaacagtcgagcagcgc
gtgccagacacgagcgacaaggaacaaaagaggcccattttatcgatgacaagcccatca
aggaaagccattttgatagatttccacgaacagccttccaaacgaaagaggcgaagttta
tcttccccatcgaaatatgaagagtcaaaatggagaaaactgcatctagacaggccgccc
gcagaacaggaatcctatagccaccctagctcacaggacaaggttaccgatgattctgat
aggaagacaggtgaagacgtcaacatggacgacagtggcgactcagatacatgcatgcag
gacatcaccgacgatgtgagcaaagtaaagtcggaggacgttgacacggatgttaagcat
ccgatctgtagaagtgaggcacatccgcaaaacacgtgtgaggaaacacctctgaccttc
tctgatgaagatgaacttccggatgtcgagagtaaggaggaagaggaggaagaggaggag
gaagtctgtgatgcagactcggacatgaaggacttcatgacagcaaatcactgtgacgaa
cgagggcggacactcagtgaagactgcgacccacgcggtaccttgattatctgccccttg
agcgtgatgagtaactggcagggtcagcttgaagaacacgcccatccaaacgtccacatt
gacgtccacctttactatggcaaccagcggtgtaaggatgtcaatcttctgaagcagaag
gatgtagtcatcacaacgtacggcatcctgctcagtgagtttaaagagtatctgacgact
gggttgtccccgctgatgacgatagagtggctacgcgttgtgttggacgaaggtcattgc
atcaggaaccccaaagcgaagcaaaccaaagccgtgcttacccttcagtcacaacgcaag
tgggtgctcacaggtacacccatccagaacaggatgctggatctgtggccgctcatcagt
ttcctaaacgtaacacctctcaacgagaggcactggtggcaaagtctgttggaaaaaccg
ctgcaacgtgggaagaggatagccttcaaacgtgtccagcacctgatgggtaacatcgca
atgcgaaggacaaagaacactctggtagaaggagagcctcttgtgaagctgcccaagaga
gaagtgtacatggagcgaatcaagatgtcggacgaggagagccggaggtacaagtcgatg
gaggagcaggggaaggtccagataaagaactatgttcggaacaacatgcttttaaagaag
tatatacttgtcttggagatcatgctcagactacgtcaaatgtgttgccatagctacctg
ttgcctgccaatggctattgcctccctagtgaagactcggattctgaagaagaagacagc
gaaaaaaagcgtgagaaactggtcgacagactgaaggtgatcagcgagtccgaggaggag
tgttctgtgtgtgtggacgtcctgaagacgccagtgatactaccgtgtgcacattacttc
tgtcagacatgtatcctcaacgccatcaaacacatggaacactcagagaagggttctgcc
acctgtcccttgtgtcgcgctcctttatcagaggaccagataatagacctgccaatgcaa
ccagaacctcagatctacggcgactggaaatcgagtacaaaggtggatgccctgatgagt
gccctagtgaacctgagaagtgaagacccatctgaaaagagtttggtggtctcccagttc
acctctttcctgacgctcatagagacaccactcagagagctcaagttcagatttgtgaga
ttggacggcaaaatgtctgccgcacaccgcatggaagctgtcaataagttctctgacact
gagccgggatctcccaccatcttcctcatctccctacgtgcgggtggcgtgggtctcaac
ctgactgcagcgtccagggtgttcctcatggagccgcactggaaccccgccacggaggaa
cagtgcttcgacagatgccaccgcctgggacagaccaaagatgtcgtgatcacaaagttc
atctcggaggacactattgaggatcgtatgttggacctccaggagaagaagaggatgctg
atgcagcagtctttcaagaagaagcagacaaccactgagaggaacgaacagaggacacgt
gatatcagaaacctgatgaacatcttgtga

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