Haliotis rubra (blacklip abalone): 124253616
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Entry
124253616 CDS
T07967
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124253616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124253616
03041 Spliceosome [BR:
hrj03041
]
124253616
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124253616
Spliceosome [BR:
hrj03041
]
Complex B
Other components
Prp19-related factors
124253616
Complex C
124253616
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_19
TPR_8
TPR_2
Mad3_BUB1_I
ARM_TT21_C
TPR_15
TPR_10
ARM_TT21
NRDE-2
Motif
Other DBs
NCBI-GeneID:
124253616
NCBI-ProteinID:
XP_046543380
LinkDB
All DBs
Position
Unknown
AA seq
849 aa
AA seq
DB search
MPVAEDDSRNDIFFEDDDLPYEEDILRNPFSVKCWLRYLEHKKEASREVVNMIYERALKE
LPGSYKLWYNYLKLRRTQVRGRCVTDPAYEDANSAFERALVFMHKMPRIWLDYCTFLIDQ
GKITRSRRTLDRALRALPITQHNRIWPLYLKFVRMYELPETAVRAYRRHLKLQKENTEQY
IEYLKTIGWLDEAAIRLADVINDETFVSREGKSKHQLWNELCELIAKNPDKVTSLKIEPI
IRQGLKRYTDQIGVLWNSLANYYIRGRHFERARDIYEEAIQTVITVRDFTQVFDEYAKFE
KSMIAAKMEAMEEAGASDEDDLDLELRLARLESLMDRRPLLLNSVLLRQNPHNVHEWHKR
VKLFEEKPREIINTYTEAVQTVDPQLASGKPHTLWVEFAKFYENAKQIEDARVIFDKAVK
VPYKHVDDLASVYCEWSELEIRHENNDEALKLMQKATMPPPRKVAYHDETETVQSRVHKS
LKVWSLYADLEESFGTFKSCKAVYDRIIDLRIATPQIIINYGMFLEENNYFEEAFKAYEK
GIALFKWPNVYDIWNTYLTKFIDRYVSNVHMKGQGPVMLTLLLYVSALYLLYARLEEEHG
LARHAMAVYERATNAVLPEEQYEMYNVYIKQAAEIYGVTHTRSIYEKAIEVLPNQEAREM
SLRFADLERKLGEIDRARAIYAHCSQICDPRVAPSFWATWKEFEIKHGNEDTVREMLRIK
RSVQAIYNTQVNFMSSQMLAAAGKGDAPAAAGGVVEPNEMQKLEEKARQLAEEAVRDQPQ
QPDKKLLFVRSSTTAEDIGEMVKTVNPEEINIDSDFSSDDDEEVEEVEVQTQMIPNKVFG
GLVNEDEDD
NT seq
2550 nt
NT seq
+upstream
nt +downstream
nt
atgccggtagcagaagatgattcaaggaacgacattttctttgaagatgatgatctacca
tatgaagaagatattctgaggaacccattctcagtgaaatgttggctccgctacttggag
cacaaaaaggaggcgtcccgggaggtggtcaacatgatatatgagcgggcgctcaaggag
ctgccagggagctataagctctggtacaactacttaaaactgaggaggacccaagtacga
ggccgttgtgtcactgacccagcatatgaggatgctaacagtgcctttgaaagggctctt
gtcttcatgcacaagatgccccggatctggttagactattgcacgttcctcatcgatcag
gggaagatcacacgatcccgtcgtacgctggaccgagcactccgggctctgcctataact
caacacaacagaatatggcctctttaccttaaatttgttcgtatgtatgaactgcctgag
accgccgtaagagcctacagaagacatcttaagcttcagaaggaaaacacagagcagtac
atcgagtacttgaagacgattggctggctggatgaagctgcaataagactggcagatgtt
atcaatgatgaaacgtttgtttcaagggagggaaaatcaaaacatcagttgtggaatgag
ctgtgtgagctgatcgccaagaaccctgacaaggtgacatcactgaagattgagccaatc
atccgccagggtttgaagcgctacacggaccagattggtgttctgtggaactcactggcc
aactactatattcgaggccgccattttgagagggcgagggacatctacgaggaagccatt
cagacagtgatcactgtccgtgacttcacacaggtgtttgatgaatacgccaagtttgag
aaaagtatgatcgctgctaagatggaagctatggaggaggctggagcatctgatgaagat
gaccttgaccttgagttacggcttgcaaggttagagagccttatggatcggcgaccactt
cttctcaacagcgtccttcttagacagaatcctcacaatgtccacgagtggcacaaacgc
gtgaagttgtttgaagagaaaccaagagagatcatcaacacatacacagaggcggttcag
acagtcgaccctcagctggcgtccggcaagccgcacacactctgggtggagtttgccaag
ttctacgagaatgccaaacaaatagaggatgctcgagtgatctttgataaggctgtgaag
gttccctacaagcacgtggacgacctcgcctctgtgtactgtgaatggtcggagctggag
atcagacatgaaaataatgatgaggctctgaaactgatgcagaaggcaaccatgccacca
ccaaggaaggttgcttaccatgacgagacggagacagtgcagtcaagagtccacaagtct
ttgaaagtgtggtccttgtacgcagacctggaggaaagcttcggtactttcaagtcatgt
aaagctgtgtatgatcgtatcatcgacctccggattgcaaccccgcagatcattatcaac
tatggcatgttccttgaggagaataattactttgaggaggctttcaaggcctatgagaag
ggaattgcattgttcaaatggccgaatgtgtatgacatatggaatacctacctcaccaag
ttcatcgacagatacgtgagtaatgtacatatgaaagggcaaggacctgttatgttaaca
ttgttactctatgtctcagctctgtatctgctgtacgcacgtctggaggaggagcatggt
ctggcacgccatgcaatggcagtgtacgagagagccacaaacgctgtactgccagaggaa
caatatgaaatgtacaatgtgtacatcaagcaggctgcagagatctatggtgtgacacac
acaaggtccatctatgagaaggccatcgaggtgctgcccaatcaagaagccagagagatg
agtctgaggtttgctgacttggagagaaagttgggagagattgaccgagcacgagctatc
tacgctcactgctcacagatctgtgatccgagggtagcaccatcattttgggcaacatgg
aaggagtttgagatcaagcatggcaatgaggacactgtgagagaaatgctgaggatcaaa
cgcagcgttcaggccatatacaacacacaggtgaacttcatgtcatcccagatgctggct
gcagcaggtaagggggatgcaccagctgcagcaggtggagttgtggagcccaacgagatg
cagaagctggaggagaaggctcggcagctggcagaggaggctgtgcgagaccagcctcag
cagcccgacaagaaactactgtttgtcaggagctcgaccacagcagaggacattggcgag
atggtgaagaccgtcaaccccgaagagatcaacatcgactctgacttctccagtgacgat
gatgaggaagtggaggaggttgaagttcagacacagatgatccctaacaaggtctttggg
ggacttgtcaatgaggatgaggatgactga
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