Haliotis rubra (blacklip abalone): 124256101
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Entry
124256101 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: polyadenylate-binding protein 1-like
KO
K13126
polyadenylate-binding protein
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03015
mRNA surveillance pathway
hrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124256101
09123 Folding, sorting and degradation
03018 RNA degradation
124256101
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124256101
03041 Spliceosome [BR:
hrj03041
]
124256101
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124256101
mRNA cycle factors
Stress granule specific factors
124256101
Spliceosome [BR:
hrj03041
]
Complex C
Other components
Complex C specific factors
124256101
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_Nup35
RRM_occluded
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
124256101
NCBI-ProteinID:
XP_046545998
LinkDB
All DBs
Position
Unknown
AA seq
572 aa
AA seq
DB search
MNPRGPSYPMASLYVGDLHPXVTEAMLFEKFSTAGPVLSIGVCRDMITRQSLGYAYVNFQ
QPAGAERALDTMDFDTIKGRKIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKLASDENGSPDYGFVHFDTEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERI
ALLGDKMKRFNNVYIKNFGDELDDDKIRELFDPFGKIISAKVMTDEIGKSRGFGFVSYEE
PEAAEKAVDNLNGMELGGGKVLYAGRSQKKAECQAELKDKFEKIKMERINRYQGVKLNVK
NLDDVVDDERLRKEFSQFGTITSARVMSEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIV
SKPLYVALAQRKEDRQAHLASQYMQRMTTMRQQQTSQFSQMFQPAVPTMPQAQRGFFAPT
QMPQVRASPRWQTQVRPTQPTAGFQGMPASGQMRTTAPRADQPAVLAVVNAQPMPQQSVV
IPGQEPLTASMWAAAPPQEQKQMLGERLFPLIQRMYPELAGKITCMLLEIDNSELLHMLE
SNETLKAKVDDAVAVLQAHQAKEAAAMSKGDK
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgcgaggaccaagctatccgatggcatccctctacgttggagatctccacccg
natgtcaccgaagccatgttgttcgagaaattctcgacagcaggacccgtgttgtccata
ggtgtatgtcgagacatgataactcgacaatcacttggttatgcttatgttaattttcaa
caacctgctggcgctgaaagggctttggacacgatggactttgatactatcaagggtaga
aaaatcagaataatgtggtctcaacgtgacccttccttgagaaagtctggcgtgggcaat
gtgttcatcaagaatttggacaagagcattgacaacaaggctctatacgatactttctca
gcttttggcaacatcctgtcttgtaagttagcttccgatgaaaatggctccccggattat
ggctttgtccattttgatactgaagaagcagccagacaggccattgagaaagttaatggc
atgttgctcaacggcaagaaagtgtatgttggcaagttcatccctaggaaagagcgaatc
gccctccttggtgacaagatgaaacgcttcaacaatgtttacatcaagaacttcggagat
gagttagatgatgacaagattagggaattgtttgatccatttggcaagatcataagtgcc
aaggttatgactgatgaaattggcaagtctagagggtttggttttgttagctacgaagaa
cctgaggcagctgagaaggccgtagacaacttgaacggcatggagcttggaggggggaag
gtgttgtatgctgggcgttcacaaaagaaagcagaatgtcaagctgaactgaaggacaag
tttgagaagatcaaaatggagaggatcaaccgataccagggtgtgaaactgaatgtaaaa
aatctggatgatgtggttgatgacgagagacttaggaaggagttctcacagtttggaacc
atcaccagtgctagagtcatgagtgaaggtgggcggtccaaaggcttcggctttgtgtgc
tttagctctccagaggaggcaaccaaggctgtgacggagatgaatggtcgtatcattgtg
tcaaaacctctgtatgtggctctggcccagcgcaaggaggacagacaagctcacctcgcc
tcacagtacatgcagagaatgaccacaatgagacaacagcaaacctcacagtttagccag
atgttccagccagctgtgcccaccatgccccaagcccagcgtggattctttgcaccaaca
cagatgccccaggtcagagccagtcccaggtggcagacccaagtccgacccacgcagcca
actgctggtttccaaggcatgcctgccagtggccagatgcgcaccactgccccacgagct
gatcagccagctgtccttgcagttgtcaatgcccagccaatgccccagcagtcggttgtc
atcccagggcaggagcctctgacagcctccatgtgggctgctgcaccaccacaggaacag
aagcagatgctaggagagaggctgttccctctgatccagaggatgtaccccgagcttgct
ggaaaaatcacttgcatgttgctcgagatcgacaactcagaacttcttcatatgttggag
tcaaacgagactctcaaggcaaaggttgatgatgctgttgctgtattgcaagcccaccag
gccaaagaagccgctgccatgtccaagggcgacaagtga
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