Haliotis rubra (blacklip abalone): 124256157
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Entry
124256157 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: cleavage and polyadenylation specificity factor subunit 3-like
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124256157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hrj03021
]
124256157
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124256157
Transcription machinery [BR:
hrj03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124256157
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124256157
U7-dependent histone pre-mRNA processing factors
124256157
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
DUF7928
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
124256157
NCBI-ProteinID:
XP_046546070
LinkDB
All DBs
Position
Unknown
AA seq
687 aa
AA seq
DB search
MASKRKSESQVPAEESEQLIIRPLGAGQEVGRSCHIMEFKGKTIMLDCGIHPGMNGYASL
PFLDMVDVEEIDLLLISHFHLDHCGALPYFLEKTGFKGRCFMTHASKAIYRWLLSDYVKV
SNIATEAQLYSEKDIENSMDKIETVNFHQETEVNGVKFWCYTAGHVLGAAMFMIEIAGVK
VLYTGDYSRQEDRHLMAAEIPNVRPDIVIIESTYGTHIHEKREDRELRFTSLVHDIVNRG
GRCLVPVFALGRAQELLLILDEYWSQHPELHDIPIYYASSLAKKCMSVYQTYINAMNDKI
RRQITISNPFIFKHIINLKSMEQFEDIGPSVVLASPGMMQSGLSRELFENWCTDKRNGCI
IAGYCVEGTLAKHILSEPDEIVTMTGQKLPLKCSVDYISFSAHADYQQTSEFLRALKPPH
VVLVHGEANEMSRLKGALQREYEDSTDYKMEVHNPRNTVAVELHFRGEKLAKVVGSLAAE
KAKQGTKVSGILVKRNFNYHIVAPGDLPNYTDLAMSTVTQRLSIAYTGTIPLLRYYLSQL
AGDVEAIKVNEKQALRVFKTITVVFEPRMVVIEWIANPVTDMYADSVVTVILRAEKDPMP
QKNVPAVMVVDRSHFQECVMDMMKEMFGQASTGKLIKNNNLTVTVDEKTAVINLETQEVQ
CEDEALQHVIQNSVTRLYQAITPLKVG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcaaaacgaaaatccgagagtcaagtaccggctgaagagagcgaacagctcatt
attagacctctaggagctggtcaagaggttgggcgatcatgtcacatcatggagttcaag
ggaaaaactataatgctggactgtgggatccaccctggaatgaacggctatgcgtcactg
ccgtttcttgacatggtggatgtggaggaaatagacctgctcctcatcagtcatttccac
ttggatcactgtggagccttaccatacttcctggagaagacagggttcaaaggtcggtgc
ttcatgacacatgcctcaaaagccatataccgatggcttctatcagattatgtgaaagtc
agcaacattgcaacagaggcacagctctactcagagaaagacattgagaattccatggac
aaaattgaaactgtcaacttccatcaggaaactgaagtgaatggcgtgaagttctggtgc
tacacagctggacatgtgttgggggcggccatgtttatgatagagattgctggggtcaag
gttctgtacactggagactattcacgacaggaggacagacatttaatggcagctgagatc
cccaatgtacggccggacatcgtcatcatcgagtcgacatacggcacacacatccatgag
aagcgggaagatagagagttgagatttaccagtcttgtccatgacattgtgaatcgagga
ggtcgctgcctcgtgcctgtcttcgctcttggccgagctcaggaactgcttctcatttta
gatgaatactggagtcagcatcctgagcttcacgacatccccatctactatgcatcatcg
ctcgccaagaagtgcatgagtgtgtaccagacatacatcaacgccatgaatgacaagatc
agacgtcagatcaccatcagcaaccccttcatcttcaaacacatcatcaacctcaagagc
atggagcagtttgaagacatcggcccgtcagtggtgctagccagtcctggtatgatgcag
agtggattgtcaagggaactgtttgagaactggtgtaccgacaagcgtaatggctgtatc
attgctggctactgtgtggagggcactctagcaaagcacatcctgtctgagccagatgag
atagtgacgatgacggggcagaagctgcccctgaagtgttccgtggactacatctctttc
tccgcccatgcagactaccagcagaccagcgagttcctccgagctctcaaacctccacat
gttgttctcgtgcatggtgaagctaatgagatgagtcgtctgaagggtgcgctacagcgg
gagtatgaggacagcaccgactacaagatggaggtccacaaccctcgcaacactgtcgct
gtagagttacacttccgtggagagaaactagcaaaggttgtgggcagtctggcagcagag
aaagctaaacaaggaaccaaggtgtccgggatcctggtgaagaggaacttcaactaccat
attgtggcaccaggagatctgccaaattacactgatctggccatgagcacagtgacccag
aggttgagtatagcctacacaggaacaatccctcttcttcgctactacctgtctcaactt
gctggggatgtggaagccatcaaagtcaacgagaagcaggctctcagggtgttcaagact
atcacagttgtgtttgaaccaagaatggttgtcatagagtggatcgctaacccagtgaca
gacatgtatgctgattctgttgtcacagtcatcctcagagcagagaaagatccaatgccc
cagaaaaacgtccccgcagtgatggtggtggaccgcagccactttcaagagtgtgtgatg
gacatgatgaaggagatgttcggacaggccagcacagggaagctaatcaaaaacaacaat
ctcacagttacagtggatgaaaaaacagcagtgatcaacttagagactcaggaggttcag
tgtgaagacgaagcactccaacatgtgatacagaactccgtcacaaggttgtaccaggca
attacacctctcaaggtgggatga
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