Haliotis rubra (blacklip abalone): 124258613
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Entry
124258613 CDS
T07967
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hrj03016
]
124258613
Enzymes [BR:
hrj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
124258613
Transfer RNA biogenesis [BR:
hrj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
124258613
Prokaryotic type
tRNA splicing ligases
124258613
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-GeneID:
124258613
NCBI-ProteinID:
XP_046548633
LinkDB
All DBs
Position
Unknown
AA seq
502 aa
AA seq
DB search
MRTYNDELKYLEKISGNCWHIKKGFVENMKVDGYFYTNDRLEKLMFDELKHSCNSKGFGG
FLPGMKQIANVAALPGIVSKSVGLPDVHSGYGFAIGNMAAFDMNDPTAVVSPGGVGFDIN
CGVRLLRTNLHAKDVIPLKEQLSQCLFDHIPVGVGSRGIIPMTAQNLEEALEMGMDWSLR
EGYAWAEDKEHCEEYGRMLNADPSKVSNRAKKRGLPQLGTLGAGNHYAEIQVVEEIYDDY
AAKKMGIEFKDQVCVMIHSGSRGMGHQVATGTCLWMRGSVRAVKREDKQKSMSQDKYKIS
ILLKNYMAAAANYAWVNRTSMTFLTRQAFAKMFKTTPDDLDMHMIYDVSHNIAKVEEHFI
DGKQKTLLVHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETF
GTTCHGAGRALSRAKSRRNLDYSDVLAALDEKGISIRVASPKLVMEEAPESYKNVTDVVD
TCHAAGISKKAIKLRPIGVIKG
NT seq
1509 nt
NT seq
+upstream
nt +downstream
nt
atgaggacatataacgatgaactcaagtacttggagaaaatctccggcaactgctggcac
atcaagaagggatttgtggaaaatatgaaagttgatggatatttctacacaaatgaccgc
ttagagaagctgatgtttgatgagttgaagcactcatgtaacagtaaaggttttggcggc
tttctgccggggatgaagcagatcgccaatgttgctgcattacctggcattgtctcgaaa
tcggttggacttcctgatgttcattccgggtatggctttgctattggtaacatggccgcc
tttgacatgaatgaccctacagcagtcgtctcccctggtggtgttggttttgacataaac
tgcggtgtgcgcctcctacgtacaaatctccatgctaaggatgtgatccccctgaaggaa
caactgtcccagtgcctgtttgatcacatcccagttggtgtcggatcacgggggatcata
cccatgacagcccaaaacttggaggaggctctggaaatggggatggattggtccctcagg
gaaggctatgcatgggctgaagacaaggaacactgtgaggagtatggcagaatgctcaat
gctgatccctctaaagtcagcaacagagcaaagaagaggggccttcctcagctcgggacg
ctgggtgccgggaaccattacgctgagatccaggtggtggaggagatctatgacgactat
gcggccaagaagatgggcattgagttcaaggatcaggtctgtgtgatgatccacagtggc
agccgaggcatgggacaccaggtggcaacaggtacgtgcttgtggatgaggggctctgta
agggcagtaaagagagaagacaagcaaaagagcatgagtcaggataagtataaaatatca
attttactcaaaaattacatggcagccgccgccaactacgcctgggtcaaccgcaccagc
atgaccttcctcaccagacaggcatttgccaagatgttcaagacgactccagatgacctt
gacatgcatatgatctatgacgtgtcgcacaacattgccaaagtagaggagcactttatt
gacggcaaacagaagacgcttctcgtgcacaggaagggatctacacgagccttccctccc
caccatccactcattccggtcgattatcagttaacgggccagcctgttctcattgggggc
acgatgggcacctgcagctatgtgctgacgggcaccgaacagggcatgaccgaaaccttt
ggcacaacgtgtcacggcgcagggagagcactctcgcgagctaagtcccggcggaacctg
gactacagtgatgtactggctgccttagacgagaaggggattagcatcagggtggcatcc
cccaaacttgtcatggaggaggctccagaatcttacaagaatgtgacagatgtcgtggat
acatgtcatgcagctggtatcagcaagaaggcaataaaactacgacctatcggggtcatc
aaaggctag
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