Haliotis rubra (blacklip abalone): 124258986
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Entry
124258986 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: replication factor C subunit 1-like
KO
K10754
replication factor C subunit 1
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03030
DNA replication
hrj03410
Base excision repair
hrj03420
Nucleotide excision repair
hrj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124258986
03410 Base excision repair
124258986
03420 Nucleotide excision repair
124258986
03430 Mismatch repair
124258986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hrj03032
]
124258986
03400 DNA repair and recombination proteins [BR:
hrj03400
]
124258986
DNA replication proteins [BR:
hrj03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
124258986
DNA repair and recombination proteins [BR:
hrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
124258986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RFC1
AAA_lid_RFC1
BRCT
AAA
AAA_22
AAA_16
AAA_14
nSTAND3
AAA_30
BRCT_2
AAA_7
PTCB-BRCT
Rad17
AAA_33
RNA_helicase
RuvB_N
AAA_5
AAA_19
NTPase_1
AAA_18
NPHP3_N
AAA_17
AAA_11
Motif
Other DBs
NCBI-GeneID:
124258986
NCBI-ProteinID:
XP_046549003
LinkDB
All DBs
Position
Unknown
AA seq
1060 aa
AA seq
DB search
MDIRNFFGPVGVKKGKNTGNDEKKKHLSESNRKGSRKTSTERNSRKDSGDSHKTDTKNKK
RKKESTTEEEADAEDVVHKKGKPRSKKTQRIESDSDEEPIPKKNKKKKEAVVFIDDSDEE
TDRPKKRSSLDGFVTVTPPKPKQSSAKTPEAKTPITATDFFGSSSVQRSDRKIAAAKRKQ
STERRNSSDVEMHDDDDFSKTLSQLDDEVIPKKVKKESPDKVNGEGDKSLSSKLSSRMKT
LVEDTPEKPSKKSTVIVPDTPKSGKTSPLKKPSPKKSPVRSNIVFTPKKSPVKTESKKTS
PSSPSPSKTSPKSATSPKEGTPKLVNRASYRAYLHREGPSALGSKEIPEGADNCLEGLTF
VITGVLESLERDDAKSLVEKYGGKVTGSISKKTSYIVVGRDAGESKLNKANQFKTHQLDE
DGLLDLVRKMPGKKSKYLVKAEEDAKKEKLEKQKLEKRKSEENNNVPHKKEKHSEELSKK
SSKPSPSKSDQSGESLLWVDKYKPTSIRQVIGQQGDKSNAKKLLGWLRQWHHNRASGTKP
QGKFFGKDDGSGFRAALLSGPPGVGKTTTATLVCQELRFSYIELNASDTRSKKSLKEFVA
EALNNTTLVDFMGPSRADTGGHKHCIIMDEVDGMAGNQDRGGIQEMVQLIKQTKIPVICI
CNDRNHQKMRTLSNYCFDXRFYKPRVEQIKGAMMSMIYKEGLKIAPPVLNEIILGANQDV
RQVIHNLCMWTATDKTLTYEQAKKDAKNAEKDYKLSPFDVCRKVFVGGEETAKMTIHDKS
DLFFNDYSFTPLFVQENYTSVIPYSARGNTSRHLSALARAADSICDGDLADRKIRSSQNW
NLLPAQAIFSSVIPGEVMRGQLTPWCTVPSGWNLEAMKGLNMDYLPSVIRHVMTHPLVQH
GGDGVREVIDFMDNYDIIKEDFDNILEITKWPNSSDPLSKLDTKTKAAFTRTYNKESHVE
XPYATGVMSKKRRGRAPIAEEDDLMDGEDRAAMAVSSDEDNDDLEADTMIKKGTSSKTAG
KKGGDAAGKKGGDAAGKGKAGGKGKAGSGGKGKGKGKGKS
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggatataaggaatttctttggcccagtcggggtaaagaaaggcaaaaacactggtaat
gatgaaaagaagaaacatttgtcagagtccaacaggaaaggctcaaggaaaacgtctaca
gaaagaaactccagaaaagacagtggagactcccataaaactgacacaaaaaacaagaaa
aggaaaaaagagagcacgactgaagaggaggctgatgccgaggatgttgtacacaagaag
ggaaaaccgagatccaagaaaacacaaagaatagaatcagactcggatgaggagccaatt
ccaaagaaaaacaaaaagaagaaggaagctgttgtattcattgatgattctgatgaggaa
actgatagacccaagaagagatcatcattagatggctttgtgacagtaacaccacccaaa
cctaagcaatctagtgctaaaactcctgaggcaaagacaccaatcactgccacggatttc
ttcggaagtagttctgtgcagaggagtgatcgcaaaatagcagcagcaaagaggaaacag
tcgactgagagaagaaattccagtgatgtagagatgcatgatgacgatgacttttcgaag
actctgtcccagcttgatgacgaagtgatacccaagaaagtgaagaaagagtctcccgat
aaagtaaatggagaaggagacaagagtctgtcaagcaagctgtcaagtcgtatgaagacc
ttggtggaagacactccagaaaaacccagcaagaaatctactgtcattgtgcctgacaca
cctaaaagtgggaagacttctccactcaagaagccgtcacccaagaagtcaccagtcaga
agcaacattgtcttcacaccaaagaagtccccagtgaaaacagaaagcaagaaaacatct
ccctcgtcacctagtccttcaaagacttctcccaagtctgccaccagtcccaaggaagga
actcccaagctggtgaaccgagcaagctaccgggcgtacctccaccgagaaggtccatca
gccctcggctccaaggaaatcccagagggagctgataactgtctggagggcctgacattt
gtcattaccggagtactggagtcactggaacgggatgacgccaagagtcttgtagagaag
tatggcggcaaggtcactggttctataagcaagaaaaccagctacattgtagttgggagg
gatgctggagagagcaaactaaataaggcgaatcagttcaagacacatcagcttgacgag
gatggtctcctggatctggttcgaaagatgcctggaaaaaagtccaagtacctggtgaaa
gcagaagaagatgccaagaaggaaaaactagaaaaacaaaaactggagaagagaaaatca
gaagaaaacaacaatgttccacataaaaaagaaaaacattctgaggaattaagcaaaaaa
tcttcaaaaccatcaccatccaaatctgaccaatcaggagagtcgttactgtgggtggac
aaatacaaaccaaccagtatcaggcaggtcattggtcaacaaggagacaagagcaatgcc
aagaagcttctcggttggctgcggcagtggcatcataacagagccagtggaaccaagccg
caaggtaaattctttgggaaagatgatgggtctggtttcagggcagctcttctctctggg
cccccgggtgttgggaagaccacgacggcaacacttgtatgtcaggaacttaggttctcc
tatattgagctgaatgcatcagacactcggtcaaaaaaaagcttgaaggaatttgtggca
gaggcactgaacaacacaacactggtggacttcatgggtccgtccagggctgacacagga
ggccacaagcactgcatcatcatggacgaggtggatggcatggctggtaaccaggaccgg
ggtggcatccaggaaatggtacagctgatcaaacagacaaagattccggtcatctgcatc
tgtaacgaccgtaaccaccagaagatgcgcacactgtccaactactgcttcgacnttcgc
ttctataaacccagggtggagcagatcaagggagccatgatgtccatgatctacaaagag
gggttgaagatcgctccacctgttcttaacgagatcatcttgggagccaatcaggatgtc
cgacaggtgatccataacctgtgtatgtggacggccacagacaagacactcacctatgaa
caggccaagaaagacgccaagaatgcagagaaggactacaagctgagtccatttgatgtg
tgtcggaaggtgtttgttggaggagaggagacggccaagatgacgatccacgacaagtct
gacttgttcttcaatgactactccttcacaccactgtttgtgcaggagaactacacaagt
gtcattccatattctgcaagaggcaacacatcgcggcacctgtcggcattggctcgtgca
gcagacagtatctgtgatggagatctagccgacaggaagatcagatcttctcaaaactgg
aacctgctcccagcacaggccatcttctccagtgtgatccccggggaagtgatgcggggg
cagcttaccccatggtgcacagttcccagtggctggaacctcgaggcgatgaagggtcta
aacatggattacctgccgtctgtgatccgacacgtgatgacccaccctctggtgcagcat
ggcggagatggggtcagggaggtcatcgacttcatggataactacgacattatcaaggaa
gactttgacaacatactggaaataacgaagtggccaaacagttccgatcccctcagtaaa
ctggataccaagacaaaggcagctttcactaggacctacaacaaggagtctcatgtggaa
tagccttatgccacgggggtcatgtctaaaaagaggcgtggtcgagcccctattgcggaa
gaggatgacctcatggatggtgaggacagggcagcgatggcagtcagctccgatgaggac
aatgacgacttggaggctgacaccatgatcaagaaggggacgtccagcaagacggcaggg
aagaagggaggtgatgctgcagggaagaagggaggtgatgctgcagggaaggggaaggct
ggggggaagggaaaggctggctctggggggaaggggaaaggcaaggggaagggcaagagc
tga
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