Haliotis rubra (blacklip abalone): 124265533
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Entry
124265533 CDS
T07967
Name
(RefSeq) helicase SKI2W-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124265533
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124265533
Enzymes [BR:
hrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124265533
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124265533
mRNA degradation factors
3'-5' decay
Ski complex
124265533
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
DEAD
MTR4_beta-barrel
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
Motif
Other DBs
NCBI-GeneID:
124265533
NCBI-ProteinID:
XP_046556276
LinkDB
All DBs
Position
Unknown
AA seq
1228 aa
AA seq
DB search
MQTPEMKFDLVHTGCHGGVEVVPVETTDHQCVLPRKTLPNGLPPVLPTLQEDLEHYLTCP
EQLPVHDVLRSQQFWPRERKPERLLSVDVCPVQTTIQVERNTTTGQLLGYKEEYIPDTGK
TANNSLSLRRPPGPASQDVKGNTGNYPFWPGGLDEPELEAVVEGVDTAVVEFEKDLLTVP
PGMKAGMTFETSDKTSRNTDVINLADILADGADLDLGDSDEETEPQGKEQESADKAPADS
LTRSESLENLVQVEKSGAPVLPRPRPAEVKEQWAVKVDINQPVDDFYKRIPDMAYKWPFE
PDIFQKQAILHLEKHESVFVAAHTSAGKTVVAEYAIALSLKHMTRTVYTSPIKALSNQKF
RDFKTTFGDVGLVTGDVQLNQTAACLIMTTEILRSMLYNGSDVIRDLEWVIFDEVHYIND
SERGVVWEEVLIMLPQHVNIILLSATVPNTMEFADWIGRIKRKKIYVISTLKRPVPLEHY
LYTGNSNKTSNELFLIVDSKGQFVTQGYNKSVEAKKERASKSSQSFGPKGTRGGNPAQDK
NVWLSLIDMVKKKDKLPMVAFTFSRKKIEENADKLGSVDLTTQSEKSEIHVFFHRCVNKL
KPPDRNLPQIRNMEDILKRGIGIHHSGILPILKEVVEMLFQKGLVKILFATETFAMGVNM
PARTVVFDSIRKHDGTNFRDLLPGEYIQMAGRAGRRGLDTTGTVIILCKGDVPEVSNLHS
MMLGKPTKLESQFRLTYTMILNLLRVEQLRVEDMMKRSFSEFHAQKDATKHRDAIQQLAK
KVKDIQEIECFMCSIDLENYFKSWSEYQDLRKNLQSVVLSHPAAIKALSAGRVVVINKSS
HRNTLGVVLNSSMGQNNDRIFTVLVICEKHYGDAAQNDKHSAELSPILSRQLFQPEGPCW
HDVVKVKGEEISVVTTKTLKVEPTKIINDVQKRQQLRFKDDPPGQSVSMTAQELLRLTEA
NLSGMSGLDPVKDLHLRDISLVEQFRSLQFLEDNLRKYQCINCPKFEDHFRHVQKNMSIQ
EEYERLKFLLSDQSLTLLPEYEQRIKVLQDLNYIDANNAVQLKGRVACEISTHELMITEL
VFENALTDLHPTDIAALLSCMVFEQKKSSEPNLTDTLKKGHERILEIADRIDRLQKDHKM
QVPAVDYKIGIMEVVFEWARGMPFAEITDLTDVQEGIIVRCIQRLHETLHDVRNAARIIG
DPVLFQKMEEASAMIKRDIVFAASLYTQ
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atgcagacgcctgaaatgaaatttgatttggtccatactggttgtcatggaggcgtggaa
gttgttcccgtggaaaccacagatcaccagtgtgttttgcctcgaaagactctgcctaat
gggctgccccctgtactgccgactctgcaggaggacctggagcactacctcacttgtcct
gaacagctgccagttcatgatgtcctccgatctcagcaattctggccgagagaaaggaaa
cctgagcgtttgttgtcagtagacgtttgtccagtacaaactaccatacaggtagaacgg
aacaccacgacaggacaacttctgggttacaaggaggaatatattccagacactggcaaa
actgccaacaactctttgtctttgagacggcccccgggaccagcgagtcaggatgtgaag
ggcaacacagggaactatcccttctggccaggcggcctggatgagcctgagctggaggct
gtggttgaaggagtggacactgctgttgtagagtttgaaaaagacttgctcacagttcct
ccaggtatgaaggctggaatgacatttgagacatccgataaaactagtcgtaatacagac
gtcatcaatctggcagacatattggctgatggggctgaccttgaccttggtgacagtgat
gaagaaacagaaccacagggaaaagaacaggaatctgcagacaaggcccctgctgactct
ctgaccaggagtgaaagcttggagaacttagtgcaggtggagaaatcaggagcacctgtt
cttccccgtccccgtccggctgaggtgaaggagcagtgggcagtcaaagtggacatcaac
caaccagttgacgacttctacaagagaataccggatatggcttataagtggccatttgag
ccagacatcttccagaaacaggccatcctccatcttgagaaacacgaaagtgtgttcgtt
gctgcccacacctccgctgggaagaccgtggtggcggagtacgccatcgctctctcgctc
aagcacatgaccagaacggtgtatacatcccccatcaaggctttatccaatcagaagttc
cgagacttcaagaccacgttcggtgatgtcggacttgtgacgggagatgtacagttgaat
cagacagcagcatgtcttatcatgacaactgagattctccggtcaatgttgtacaatggg
tctgatgtgatccgtgacctggaatgggttatctttgatgaggtccactacatcaatgac
tccgagcgtggtgttgtgtgggaggaggtgttgatcatgctgcctcaacacgttaacatc
attttactgtcagccacagtcccgaacacgatggagtttgctgactggatcggccgtatc
aagaggaagaagatctacgtgatcagcacgctgaagcgacccgtgcccctggagcactat
ctgtacacaggcaacagcaataagaccagcaatgaactcttcctcatcgtcgactcaaag
ggacagtttgtcactcagggatacaacaagtcagtagaggccaagaaggaacgtgccagc
aaatcttctcaaagctttgggccgaaggggacaaggggaggcaaccctgcacaggacaag
aacgtgtggttgtcattgattgacatggtgaagaagaaggataagctccccatggtggcc
ttcaccttctctcggaagaagattgaggagaacgcagacaagctgggcagcgttgacctg
acaacacagagtgagaagagtgagatccacgtcttctttcaccgatgtgtaaacaagttg
aaacccccagaccggaacttgccacagatcaggaacatggaggatatcttgaagagggga
attggcatccaccacagcgggatcctacccattctcaaggaggttgtggagatgctgttc
cagaaaggccttgttaagatcctgtttgcaaccgagacatttgccatgggagtgaacatg
ccagcgagaacggtggtgtttgactccatacggaaacacgatggaacaaacttccgtgat
ttactgccgggagagtacatccagatggctggacgggctggccgacgtggtctggacacg
acaggaacggtcattatactctgtaagggagatgtccctgaggtgtccaatctgcacagc
atgatgctgggcaaaccaacaaagttagagtctcagttccgcctgacgtacacaatgatt
ctgaacctgctgcgagttgaacaactccgggtggaggacatgatgaagaggagtttctcc
gagttccacgctcagaaggatgcgacaaaacacagggacgctattcagcagctggccaaa
aaggtcaaggacattcaggagatagagtgcttcatgtgttctattgatcttgagaattac
ttcaagtcatggtcggagtatcaggatcttaggaagaatctgcagtctgttgtcctgtcc
catccagcggccatcaaggcattatctgcaggtcgtgtggtggtcatcaacaagtcaagt
cacaggaacacactgggtgtggtgctaaattcaagtatgggacagaataatgacagaata
tttacagtgcttgttatttgtgaaaaacattacggtgatgctgctcaaaatgataaacat
tctgctgagttatcgccaattctgtctcggcaattgttccaacccgagggtccatgttgg
catgacgttgtcaaggtgaaaggcgaagaaataagtgttgtgacaacaaagacactgaag
gtggagccaaccaagataattaatgatgtacagaaacgacaacaactaagatttaaagat
gatcctcctggccaatccgtttccatgacggcccaagagttgctgcgactgacagaagct
aacctttctggtatgagtggccttgaccctgtgaaagaccttcaccttcgtgacatcagt
cttgttgagcagttccggtctctgcagtttcttgaagacaatctcagaaagtatcagtgt
atcaactgtcccaagtttgaagaccatttccgccacgtccagaagaacatgtccatacaa
gaggagtacgagagactcaagtttctgctgtctgaccagagtctcaccctcctaccagag
tatgagcagaggataaaggttttacaagatctgaactacatcgatgccaacaatgcagtg
cagttgaaaggtcgcgtggcttgtgagatcagcacccatgagctgatgatcacggagctg
gtgtttgagaatgccctcaccgacctccacccaacggacattgccgctctcctctcctgc
atggtgttcgaacagaagaaatccagcgagcctaacctcacggataccctcaagaagggc
catgaacggatcctggagatcgcggaccgcattgatcggttgcagaaggatcacaagatg
caggtaccagcagtggactacaagatcggcatcatggaggttgtgtttgagtgggccaga
gggatgccatttgccgagatcactgacctgactgacgtccaggaagggatcattgtccgc
tgtatacagagactgcacgagacgttacatgatgtgcggaatgcagccaggatcatcgga
gaccctgtgctcttccagaaaatggaggaagcctccgcaatgatcaagagagacattgtg
tttgctgccagcttatacacgcagtga
DBGET
integrated database retrieval system
