Haliotis rubra (blacklip abalone): 124265889
Help
Entry
124265889 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent DNA/RNA helicase DHX36-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124265889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124265889
03012 Translation factors [BR:
hrj03012
]
124265889
Enzymes [BR:
hrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124265889
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124265889
Translation factors [BR:
hrj03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124265889
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
ATPase
AAA_22
NPHP3_N
Myosin_head
AAA_16
TsaE
AAA_19
NB-ARC
PhoH
ABC_tran
Motif
Other DBs
NCBI-GeneID:
124265889
NCBI-ProteinID:
XP_046556698
LinkDB
All DBs
Position
Unknown
AA seq
1093 aa
AA seq
DB search
MIRRLLIAADASKLTSLLSTADMYGRGRGHRGDSWGGRPGRGGRSYGGRRHDDDGDRHGR
RDRGHSRHGGRDWRDSNVDGGNDGESHSGGGGGGRPPPGLRGRDIGMWYARRSKEKKEKQ
DREQRPTVAMDSQREHHIRDLLDKINSTEPRVDMFDNPHIRPASQSNSLDNKNWAASSPQ
DMFDNPNGEASSRPQAVVKGASAFPETTDFRDDKDEDELEEEVPSMSAIIEYAKAEDEFP
LAESSVDFDGAKYAEDPMDETDHLSDRLLDEYNEKQLHDDFCKMMQFRKKLPSYEMREKL
MDDIRNNQVVVISGETGCGKTTQVPQFILDDHIELGIGSQCRVICTQPRRISAISVAERV
AAERCERCGGSDSSVGYQIRLEYRLPRKNGSILYCTTGIVLKFLESDPLLQRATHIVLDE
IHERDLQSDFLMIILKDILPRRPDLKVILMSATLNAAMFSKYFNDCPQLNIPGYTFPVEE
FLLEDVIEMLKYQPDSSQPQRRRPRGKRSRDADEERWNFEVWCRNLEGSYSRSTITALQN
MDFDKIDLDLIAALIRHITLNKSEGAILVFVPGWEEISKLHKMMQADRMYSSDKFRIIPL
HSLMPTVNQREVFNRPPPGVRKVVIATNIAETSITIDDIVYVIDCGKIKVKDFQPENNLS
TLEAKWVSKANSKQRRGRAGRVQPGVCYHLYTGLKWTEVDDYLPPEILRTRLEELCLHIK
LLKLGKIEPFISKAIQQPSMEALHRAIITLQNLNALDKDENLLPLGYHLARMPVDPHTGK
MILFGAMFCCLDPILTVAASLSFKDAFFIPLGKEEEADRARKALSEDSKSDHIMLIKAFE
GWERAKSRGNDRDYCWQNFLSPSTLRLLKDMKGQLAQLLLELGFIKNKNPKDLAVNVNSN
NYGLVKAVLCAGLYPNVAKVAKCPRPGAPPYKMVSLYTRHEGKADVHPKSVNSRENFFES
KWMVFYHKLKTTKVYVHDCTMVSPYPLLFFGGDIGSGKDGDQETVSVDDWIVFKASPTTA
QLVKDLRRELDKLLEHKITHPGPTSWSEAEKEGALMRAISDLITTDEDQFQSGVLAAHST
DTQHHRRNRHKRW
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgattagacgactgcttattgcagctgacgcctcaaaattaacgagtctgctgtcaact
gcagatatgtatggccgtgggagaggacacaggggtgactcttggggaggacgcccgggc
cgtgggggcagaagctatggaggcaggaggcatgacgatgatggggacagacatggcagg
agagaccgaggccactcgagacatggtggcagagactggagggacagcaatgtggatggt
ggcaatgatggtgaaagccacagtggtggtggtggtggtggtcggccccctcctggtctt
cgagggcgagacattggaatgtggtatgccagacggagcaaggagaagaaggagaagcag
gacagagaacagagaccaacagttgccatggattcacaaagagagcaccacattcgtgac
ctccttgacaaaatcaactccacagagcctcgtgtagatatgttcgacaacccacatata
aggccagcatcacaatcaaactcacttgacaacaaaaactgggcagcaagttctccccaa
gacatgttcgacaacccaaatggagaggccagctctcggccacaggctgtagtgaaagga
gcaagtgcattccctgaaactacagactttagagatgataaggatgaagatgagctagaa
gaggaagtgccatccatgtcggccattatagaatatgcaaaagctgaggatgaattccca
ctggccgagagttctgttgattttgacggtgcgaagtatgctgaagacccaatggatgag
acagatcatcttagtgacaggctgttggatgagtacaatgagaaacagctgcatgacgac
ttctgcaagatgatgcagttcaggaaaaagttaccctcttatgaaatgagggagaaactg
atggatgacatacgtaataaccaggttgtggtgatcagtggagaaactggctgtgggaaa
acaacacaggtcccacagtttatcctggacgaccatattgagctggggatcgggtctcag
tgccgagtcatctgtacacagcccaggaggattagtgcaatatcggtggcagagagagtg
gcggcagagcggtgtgagagatgtgggggatcagacagcagtgtggggtaccagatacgt
ctagaatacagattgccacgaaagaatggctctattctgtactgcacaactggaattgtc
ctcaagtttcttgaatctgacccgcttctacagagagcgacccacattgtcctggatgag
atacatgagcgtgaccttcagtcggacttcctcatgatcattctcaaggacattctacct
cgccgacctgacctcaaggtcatactaatgagtgccacactaaatgcagcgatgttctca
aaatatttcaatgactgcccccagctgaacatccctggctatacgttccctgtggaagaa
ttcctgttggaggacgttattgaaatgctgaagtatcagcctgattcaagtcagccacag
cgtcgacgtcccagagggaagcggagtcgtgatgcagatgaagagcgatggaactttgag
gtctggtgcagaaacctggaagggagttactcacgctccaccattacagcgttgcagaac
atggactttgataaaatcgacctggatctaattgccgcccttatcaggcatattactttg
aataagtcggagggagcaatcctggtgtttgtccctggctgggaagagatcagcaaactc
cataagatgatgcaggcagacaggatgtacagctcagacaagttccgtatcattccactt
cactcactcatgccaacagtcaatcagagggaggtgttcaatagaccaccacctggtgtc
aggaaggttgtcatagcaacaaatattgctgaaacaagtattactatcgatgacatcgtg
tatgtgatcgactgtggcaagatcaaagtgaaggacttccagccagagaacaacctcagc
actctggaggccaagtgggtctccaaggccaactcaaaacagaggcgtggtcgagctggc
agggtgcagcctggtgtgtgttaccatctttacacaggactgaagtggaccgaggtcgat
gattatctccccccagagattctgcggacacgacttgaggaactttgtctccatatcaag
ttgttgaagctggggaagattgaaccgtttatatctaaggcgatccagcagccatctatg
gaggctttacacagggcaatcattacattgcagaatttgaatgccttggacaaggatgag
aatctacttcctctaggctatcatctggcccgtatgccagtagaccctcacactgggaag
atgatcctattcggcgctatgttctgctgtctggaccccatcctgactgttgctgccagc
ctcagcttcaaggatgctttctttatacctctgggcaaggaggaggaagctgaccgggca
cggaaggcgctgtctgaggattccaagagtgaccacatcatgctcatcaaggcatttgag
ggctgggagcgggcaaaatcccgaggaaatgatcgagactactgctggcagaacttcttg
tctccaagcacattgcggctgttgaaggacatgaaggggcagctggcccagctgttactg
gagctggggttcatcaaaaacaagaatccgaaagacctggctgtcaatgtcaactccaat
aactatgggctggtgaaggcggtgctttgtgcaggactctatcccaatgtagccaaagtg
gcaaaatgtccacgaccaggggcgccaccgtacaaaatggtgtctctctatacacgacat
gaaggcaaggcagatgtacaccctaaatctgtcaactccagagagaacttctttgagtcc
aaatggatggtgttctatcacaagttaaagacaaccaaggtgtatgtccatgactgcaca
atggtgtcaccgtatccactgctgttctttggtggagacattggttctggaaaggatgga
gaccaggaaaccgtgtctgtagatgactggattgtcttcaaagcctcacccaccacagca
caactagtcaaggacctgcgacgcgagttggacaagttactggaacacaagatcacccac
cctgggcccaccagctggagtgaggcagagaaagagggagctctcatgcgggctatatca
gacctcatcactacagatgaagatcagttccagtcaggggtactggcagctcattccaca
gacacgcagcatcacaggaggaacagacataaacgttggtga
DBGET
integrated database retrieval system
