Haliotis rubra (blacklip abalone): 124266628
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Entry
124266628 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124266628
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrj03041
]
124266628
Enzymes [BR:
hrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124266628
Spliceosome [BR:
hrj03041
]
Complex C
Other components
Step II factors
124266628
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_DEAH11
IBR
Helicase_C
OB_NTP_bind
AAA_22
DEAD
RRM_1
IBR_1
WHD_HA2
IBR_2
nSTAND3
nSTAND_NTPase5
AAA_19
RRM_DEAH11
NAT10_TcmA_helicase
AAA_30
KH_DEAH11_2nd
ABC_tran
KH_DEAH11_1st
RBD_DEAH11
Motif
Other DBs
NCBI-GeneID:
124266628
NCBI-ProteinID:
XP_046557387
LinkDB
All DBs
Position
Unknown
AA seq
1846 aa
AA seq
DB search
MRISNERTEMNRKGRTPAPKPRTNLKQDQPKDDQPDASKEMNDTPAENDQSPHGLGATNN
QQAPTETVYERSKGGIYLGKGDKERQKLPREGGCNRQDTKGRRHSRTVDVPSKQQISQEG
PPEKTQHGRRDSVTRTTTKTRRVSGGTSTQDVLGGKENKTDANQKREEQGEVQKGTKMRA
QKKNKPRDEFDGFLRNKVGKQISVILYVRIQQHLDEKYDVKGFLRARMQTQQDVKVVKME
HVGNSTVVSVEAPSISAANKVGYLLKLSNRGSKMKLVCTLDRNEALDLPPERDEKEFEQH
ITSIKRREKKALSDHMDKINVISKGIERLSTNKHATIDEYEAMQHEKTALKDKLEELKLQ
KEQFITYMQGLESKLVSLWKDNTYAKHSGDLRKDFGIELCRLTSALPMYARRNDIIKTVQ
DNQVCVILGETGSGKSTQMTQYLHQAGFSKDGFIVCTQPRKVAARSLATHVASELVTNVG
NVVGYKVGMRSKCGGATKILYMTDHCLLNECLKDPTLSAYSCVIVDEAHERSIYTDLLLG
MLKTCLKQRRDLRAIITSATIDPDVFVRYFGDCPVLRVSGRMFPVEVEYLAESDGGKSSD
NYQKEAVNKAVYVHTKDPPGDILVFVISPLETEKCSEDFSSRLQGRTDFKCLVLHGQIQP
DEQQLVFQATPPGIRKIVFATNSAETSITIPGIKYVIDTGLAKEKRYDPRRNMSTLSVVL
ISRSSADQRKGRAGRTGPGKCYRLYSEETYREMEAVSLPEILKVHLGQAMLKLTELGINP
LEYEFVQSPGQSAIATAMTTLEELGAVKDNKITEEGKELAKLPVEPRLGLIIQKGRSEDV
LFDAVVLAVVSNVGSFIFFRGGADNDKKKADKLKIQFCHNGGDSLTLLNVYREWDKEPEK
QKNKWCFANSLNSKSLRIARETVNEVMALLKKEAKGKVTHEFKDPQEADGKLQRILFDSF
TSNICHSLGLAKAGYYAPRLDQQVHAHPSSVLYPLNLVPEWLVFEQSMKTSKDFITGLTP
VDESWVVEAIESGRLKRDLEEMRKKQLLPVHVEHVGSFLFWKLVGPSFTKLKQFEEEASH
LVKPHLAVIQASKEKGELKIFCSDRATGKLSHLFNEVTGPVKIYLEGEDLEVPLGQSKEH
AGVRVILGKGGAVKDILMADEYRTIFVDRPDENSTEDTIMSKFGCFGKIERHRIFKNPQR
RWGCITYESSAAAKEAVEKTKSDSSEVAAPEKHGRGYQDSQFKVKITWCRRKSRGFGYVD
VEPELMPKILQRGPMFIKGKLVNVGIDVKSRKSLYLENLCQSITEDDIKQAILSSLNYDE
DKTGIFQKVTVVREKVTTTKDQLGTFQTQLQAKLKTFSPENRFHVEVKEPYTTSVNYLAF
ASFTNSNEGIAACQGLSRQFHINDREVTMEPDIRPSLYVNREVYAAIKDDLDAYLKEFPI
GVNSKTLKDGTVVLYIHASSSTELAKIRANLQNIVQGEVVELGANPNLRQLFTRAGRDFL
KDTEKKCNAFIQVDGRTFTLSIHGKQEACTSVRISINDYLQQLSEGELIEVHLRRRDKPN
GLMKTLMNKYGIELEKLQQDFDLRSVVLNFKRQIVKLVGSAEDIDKAVTVIDDISSKLLE
GVKTSEEEELPDCCVCLCPIEPNDLYRLQCCGHAYCLDCVRRQLEAAVTGRDFPCLCGHD
GCEQPFTWKDLSNFVREGTLTVANLASSSLSSFVSKNTKTFKYCLTPNCDMVYRVTSKGS
VFRCPDCSVRTCTTCHAQYHDGLTCAMYNSAKDDEDSLEKWLAADSKTTKKCPNCKTPIE
KTEGCNNMHCEACTCSFCWLCLACFQESNACYDHLSKQHGGFFDQI
NT seq
5541 nt
NT seq
+upstream
nt +downstream
nt
atgaggatcagtaatgagaggacagagatgaataggaaaggtagaacacctgctccaaaa
ccaagaacaaatttgaagcaagatcagccaaaggatgatcaaccagatgcttccaaagaa
atgaatgacactcctgctgagaatgatcaatctccacatggtctcggcgctaccaacaac
cagcaggcccccacagaaacggtctatgaaagatcaaaaggtgggatttatttaggaaaa
ggtgacaaggaaagacaaaagttgccaagagagggtggttgcaacagacaagatacaaaa
gggagaagacattccaggactgtcgatgttccctcaaagcaacagatcagccaagaaggt
cctcctgagaaaacacaacatggaagaagagatagtgtcaccaggaccacaacaaagacc
agacgcgtatcaggaggaacatccacccaggatgtcctggggggaaaggagaacaaaaca
gatgctaatcagaaaagagaggagcaaggagaggtacagaaaggtacaaaaatgagagcc
cagaaaaagaacaaacccagggatgagtttgatgggttcctgagaaataaagttggaaag
cagatttctgttatactgtatgttagaatccagcaacatctcgatgaaaaatatgatgtt
aaaggttttcttcgtgcacggatgcagactcaacaagacgtcaaagttgtgaaaatggag
catgttggaaatagcactgtagtttcggttgaagcaccaagtatatctgcggctaacaaa
gttggatatttactgaaattaagtaacagaggatctaagatgaagttagtttgcacattg
gataggaatgaggcactggatcttccacctgagagggatgaaaaagaatttgagcagcat
atcacaagcattaaaagaagggaaaagaaagctttaagtgatcacatggataaaatcaat
gttatttctaagggtattgagagactgtccacaaacaaacatgcaactattgatgagtat
gaggcaatgcagcatgagaagactgctctcaaggataagttggaagagctgaaactgcag
aaggaacagtttataacgtatatgcagggcttggagtcaaaacttgtttcactgtggaaa
gataatacctatgctaaacacagtggcgatctaaggaaagactttggtatcgagctttgt
agacttacatccgcactgcctatgtatgccagaagaaacgatataatcaaaacggtacag
gacaaccaggtttgtgtcatattaggcgagactgggtcagggaagagcacacagatgaca
cagtacctccatcaggcaggcttcagcaaagatggttttatcgtgtgtacacagcccagg
aaagttgcagccagaagtctggcaacccatgttgcatctgagctagtaacaaatgttggc
aatgttgtaggttacaaagtaggaatgcgttctaaatgtggaggagctaccaagatcctg
tacatgactgatcactgcctgctgaatgaatgtctgaaagatccaactctgtctgcctac
agctgtgttatagtagacgaggcacatgagagaagcatctacactgacctgctccttgga
atgctgaagacgtgcttgaaacagcgccgtgatctcagggcaatcattacttcagcgact
attgaccctgacgtctttgtcagatattttggtgactgcccagtcttgagagtatctggc
agaatgtttcccgttgaagttgagtacctagctgaaagtgatgggggcaagtcttctgat
aactatcagaaagaagctgtcaacaaggctgtatatgtccacacaaaggatcctccaggc
gacattctggtttttgttatatctcctttagaaaccgagaagtgcagtgaagattttagc
agcagactgcagggaaggactgacttcaaatgtttggttcttcatggtcagattcaacca
gatgagcagcagttagtatttcaggccacccctccaggaatcagaaagattgtctttgcc
acaaacagtgctgagacttcaatcaccattccaggaatcaagtatgtaatcgatactggc
cttgcaaaggagaaacgttatgatcctcgtcggaacatgagcacattgagtgtagtcctc
ataagtcgcagctcagcagatcagaggaaaggtcgggcaggaagaacaggtcccggtaaa
tgttacagactctacagtgaagagacgtatcgtgaaatggaagcagtatcactgccagag
atactcaaagttcacctggggcaggctatgctgaaactgacagagcttggcattaatcct
ctggagtatgaatttgttcagtcaccaggacaatcagcaatagctacagctatgactaca
cttgaggaacttggtgcagtcaaagacaataagatcacagaagaagggaaagaactagca
aagcttcctgtagaacctcgactaggacttattatccagaaaggaagatctgaagatgtt
ctctttgatgctgttgttcttgcagttgtgagtaatgtaggaagcttcatattcttcaga
gggggcgctgacaatgataagaagaaagctgacaagctgaagatacagttctgccacaat
ggtggtgatagtctcactctgctgaatgtctacagagaatgggacaaagagccagaaaag
cagaaaaacaaatggtgctttgcaaacagccttaactccaaatctttgcgaatcgccaga
gagacagtaaatgaggtgatggcgcttttgaagaaggaggctaaagggaaggtcacacat
gagttcaaagacccacaagaagcggatgggaaacttcagagaatactctttgacagcttc
acatccaacatctgtcattctcttggacttgcaaaggcaggatattatgcccctagactt
gatcaacaagttcatgctcacccctcatcagtcctgtatccactcaacttggttcctgag
tggcttgtcttcgagcagtccatgaagacatccaaagacttcattacaggactcacacca
gttgatgaatcctgggttgttgaagccattgagtctggacgtctaaagagagatcttgaa
gagatgagaaagaaacaactcctccctgtgcatgttgagcatgtcggatcatttcttttc
tggaagcttgttggtcctagttttacaaaactaaaacagtttgaagaagaagcatcacat
cttgttaaaccacatctggctgtcattcaggcatcaaaggaaaaaggggaactgaagata
ttttgctctgatcgtgctactggcaaattatctcacctattcaatgaggtgactggacct
gtgaaaatatatttagaaggagaagatttggaggtaccattgggtcagtctaaggagcat
gctggtgtccgtgtgatccttggtaaagggggagctgtgaaagacatcctcatggcagat
gaatacagaacaatatttgttgatcgtcctgatgaaaattctacagaagacactatcatg
agcaaatttggctgttttggaaagatagagagacacaggatattcaagaatcctcaaagg
agatggggttgtattacatatgaatcttcagcagcagcaaaagaagctgtggagaaaaca
aaatcggattcttcagaagttgctgctcctgagaaacatggccgagggtatcaagactct
cagttcaaggtcaaaataacgtggtgtagacgaaagtctagaggatttgggtatgttgat
gttgaaccagagttgatgccaaagattttacaaagagggccaatgtttatcaaaggaaaa
cttgtaaatgttggaattgacgtgaaaagtaggaagagcctttatcttgaaaatctttgt
caaagtatcactgaagatgatatcaaacaagcaattctatcctctttgaattatgatgaa
gataaaactggcatatttcaaaaggtaacggtagtgagagagaaagtgaccacgaccaaa
gatcaacttggtacatttcagactcagttacaggcaaagctcaaaaccttttcgccagaa
aacagattccatgtggaggtcaaagagccatatacaacaagtgtcaactacctagcattt
gcatcgttcaccaactcaaatgagggaatagcagcttgccaaggtttgtccaggcagttc
catatcaacgaccgagaggtcacgatggagccagacataaggccatcactgtatgtaaac
agagaagtttatgcagccatcaaagacgacctggatgcatacttgaaagaattccccatt
ggagtgaattcaaagacactgaaggatggaactgtcgtactttatatccatgcctccagc
tccacagagctggcaaagattcgagctaacctacagaacattgtacagggagaagttgtg
gaacttggtgcaaatcccaatctgcgtcaactctttaccagggctggaagagactttctc
aaagacactgaaaagaaatgtaatgctttcattcaagttgatggtagaaccttcacactt
tcaatccatgggaaacaggaggcatgcactagtgtgcgcatttcaatcaatgattatctc
caacaactgtctgaaggagaactgatcgaggtgcacctgcgtagaagagacaaacccaat
gggctgatgaagacattgatgaataagtatggcatagaacttgagaaactacagcaggac
tttgacttgagatcagttgtcctgaatttcaagcgacagattgtaaaattggtgggatca
gctgaagacattgacaaagctgtcacagtcatagacgacatttcatctaaattgctggag
ggtgtcaaaacttcagaggaggaggaacttcccgattgctgtgtctgtctctgcccaata
gaaccaaacgatttgtacaggctgcagtgctgtgggcacgcctactgcctggattgtgtc
aggagacagctggaagctgcagtcactggccgagacttcccctgcctttgtgggcatgat
gggtgtgagcagccatttacatggaaggatttgtccaattttgtgcgagaaggaacatta
actgtcgcaaacctggccagctcctctttgagttcctttgttagcaaaaacaccaaaacc
ttcaagtattgcttgaccccaaactgtgacatggtgtaccgagtgacctcgaagggatct
gtgttccggtgccccgactgcagtgtgagaacatgcactacctgccacgcccagtatcat
gatggactgacctgtgccatgtacaacagtgccaaggatgatgaagacagccttgaaaag
tggctggcagccgattccaaaacaacaaagaagtgcccaaactgtaagacccccatagag
aaaacagaaggctgcaataatatgcattgtgaagcatgcacatgcagcttctgttggttg
tgccttgcctgctttcaagaatctaatgcatgttacgatcatttgagtaaacaacatggt
ggcttttttgatcaaatttga
DBGET
integrated database retrieval system
