Haliotis rubra (blacklip abalone): 124266675
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Entry
124266675 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124266675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrj03041
]
124266675
Enzymes [BR:
hrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124266675
Spliceosome [BR:
hrj03041
]
Complex C
Other components
Step II factors
124266675
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
KH_DEAH11
IBR
Helicase_C
OB_NTP_bind
IBR_1
DEAD
AAA_22
RRM_1
IBR_2
HA2_N
KH_DEAH11_1st
nSTAND3
AAA_19
Helicase_RecD
KH_DEAH11_2nd
APG6_N
AAA_29
zf-RING_11
ABC_tran
Motif
Other DBs
NCBI-GeneID:
124266675
NCBI-ProteinID:
XP_046557433
LinkDB
All DBs
Position
Unknown
AA seq
1914 aa
AA seq
DB search
MAAVPKVSNEEGLIDDEEGSIKTQVYVRSDLADDSDAVFPSNLPMDHSMRISNERTEMNR
KGRTPVPKPRTSVKQDQPKEDQPDAAKEMNDTPAEDDQSPHGLGATNNQQAPTKTVYERS
KGGIYSGKGDKERQKLPREGGCNRQDAKGRTTTKTRHVSEGTSTIDVLQGKENKTDANQK
REEQGEVQKGPQRDSVTRTTTKTRRVSEGTSTKDVLEGKENKTDANQKREQQGEVQKGTK
MRAQKKNKPRDEFDEFLRNKVGKQISVILYVRIQQHLDDKYDVKGFLRARMQTEQEVKVV
KMEHVGKSTVVSVEAPSKSVANKVGNILKLSNRGSKMKLVCTLDRNEALDLPTERDEKEF
EQHLTIIKRREKKALSDHMDKINVISKDIERLSTNKHVTIDEYQAMQHEKTALKDKLEEL
KLQKEQFKTFMQGLVSKLVSLWKDNTYAKHIGDLRRDFGIELCRLTSALPMYARRNDIIK
MVQDNQVCVILGETGSGKSTQMTQYLHQAGFSKDGFIVCTQPRKVAAISLATHVASELVT
NVGNVVGYKVGMRSKCGGATKILYMTDHCLLNECLKDPTLSAYSCVIVDEAHERSIYTDL
LLGMLKRCLKQRRDLRAIITSATIDPDVFVRYFGDCPVLRVSGRMFPVEVEYLAESDGGK
SSDNYQKEAVNKAVHVHTKDPPGDILVFVTSPLETEKCSENFNSRLQGRTDFKCLVLHGQ
IRPDEQQLVFQATLPGIRKIVFATNSAETSITIPGIKYVIDTGLAKEKRYDPRRNMSTLS
VVLISRSSADQRKGRAGRTGPGKCYRLYSEETYREMEAVSLPEILKVHLGQAMLKLTELG
INPLEYEFVQSPGQSAIATAMTTLEELGAVKDNKITEEGKELAKLPVEPRLGLIIQKGRF
EDVLFDAVVLAAVSNVGSSIFFRGGADNDKKKADKLKIQFCHNGGDSLTLLNVYREWNKE
PEKQKNKWCFANSLNSKSLRIARETVNEVMTLLKKEAKGKVTHEFKDPQEADGKLQRILF
DSFTSNICHSLGLAKAGYYAPRLDQQVHAHPSSVLYPLNLVPEWLVFEQSMKTSKDFITG
LTPVDEAWVVEAIESGRLKRDLEEMRKKQLLPVHVEHVGSFLFWKIVGPSFTKLKQFEEE
ASNLVKPHLAVIEASKEKGELKIFCSDHATGKLSHLFNEVTGPVKIFLEGEDLEVPLGQS
KEHAGVRVILGKGGAVKDILMADEYRTIFVDRPDDSSSEDTILNKFGCFGKIKSHRIFKN
PQKRWGCITYESSAAAKEAVEKTKSDSSEVAAPEKHGRGYQDSQFKVKITWCRRESRGFG
LLMLNQVMPAILRRGPMYIKGILVNVGIDRKSGQSLYLRNLGQTITEDDIKQAILSSLNY
DENETGIFQKVTVVREKVTTTEDQLGIFKTRLQAQLKTFSPDKRFHVEVKEPFPTSVNYL
AFASFTNSSEGIAACQGLSRQFYINDRVVTMEPDIRSSLYVNREVYAAIKDDLDAYLKEF
PTFGYTEVGVTSKTLKDGTVVLDIHASSSIELAKVRANLQTIVQGDVLECGANPNLRQLF
TRAGRDFLKDTEKKCKAFIQVDGRTFTLSIRGKQEACTRVLIAVNDYLQELSEGNLMEVH
LQGRDKPNGLMKALMNQYGIELEKLQQDFGLRSVVLNFKRQIVKLVGSAEDIDKAVTVID
DISSKLLEGVKTSEEEELPDCCVCLCPIEPKDLYRLQCCGHAYCLDCVRRQLEAAVTGKD
FPCLCGHDGCEQPFAWKDLSNFVREGTLTVANLASSSLSSFVSENTKTFKYCLTPNCDMV
YRVTSKGSVFRCPDCSVRICTTCHAQYHDGLTCAMYNSAKDDEGSLEEWLAAHSKTTKKC
PNCKTPIEKTEGCNNMHCKACKCSFCWLCLAWFRKSSACYDHLSEKHGGCFDHI
NT seq
5745 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgtccctaaagtatccaatgaggaagggctgattgatgatgaagaagggtct
attaagacccaagtctatgttagatctgatcttgctgatgattcagatgctgtgtttcca
agtaatttgccaatggaccattcaatgaggatcagtaatgagaggacagagatgaatagg
aaaggtagaacacctgtcccaaaaccaagaacaagtgtgaagcaagatcagccaaaggaa
gatcaaccagacgctgccaaagaaatgaatgacactcctgctgaggatgatcaatctcca
catggtctcggcgctaccaacaaccagcaggcccccacaaaaacggtctatgaaagatca
aaaggtggtatttattcaggaaaaggtgacaaggaaagacaaaagttgccaagagagggt
ggttgcaacagacaagatgcaaaagggagaaccacaacaaagaccagacacgtgtcagaa
ggaacatccaccatagatgttctgcagggaaaggagaacaaaacagatgctaatcagaaa
agagaggagcaaggagaggtacaaaagggtcctcaaagagatagtgtcaccaggaccaca
acaaagaccagacgcgtgtcagaaggaacatccaccaaggatgtcctggagggaaaggag
aacaaaacagatgctaatcagaaaagagagcaacaaggagaggtacagaaaggtacaaaa
atgagagcccagaaaaagaacaaacccagggatgagtttgatgagttcctgagaaataaa
gttggaaagcagatttctgttattctgtatgttagaatccagcaacatctcgacgataaa
tatgatgttaaaggttttcttcgggcacggatgcagactgaacaagaggtcaaagttgtg
aaaatggagcatgttggaaaaagcactgtagtttcggttgaagcaccaagtaaatctgtg
gcaaacaaagtcggaaatatactgaaattaagtaacagaggatctaagatgaagttagtt
tgcacattggataggaatgaggcactggatcttcctactgagagggatgaaaaagaattt
gagcagcatctcacaatcattaaaagaagggaaaagaaagctttaagtgatcacatggat
aaaatcaatgttatttctaaggatattgagagactgtccacaaacaaacatgtaactatt
gatgagtatcaggcaatgcagcatgagaagactgctctcaaggataagttggaagagctg
aaactgcagaaggagcagtttaaaacgtttatgcagggcttggtgtcaaaacttgtttca
ctgtggaaggataatacctatgctaaacacattggcgatctaaggagagactttggtatc
gagctttgtagacttacatccgcactgcctatgtatgccagaagaaacgatataatcaaa
atggtacaggacaaccaggtttgtgtcatattaggcgagactgggtcagggaagagcaca
cagatgacacagtacctccatcaggctggcttcagcaaagatggttttatcgtgtgtaca
cagcccaggaaagttgcagccataagtctggcaacccatgttgcatctgagctagtaaca
aatgtgggcaatgttgtaggttacaaagtaggaatgcgttctaaatgtggaggagctacc
aagatcctgtacatgactgatcactgccttctgaatgaatgtctgaaagatccaactctg
tctgcctacagctgtgttatagtagacgaggcacatgagagaagcatctacactgacctg
ctccttggaatgctgaagaggtgcttgaaacagcgccgtgatctcagggcaatcattact
tcagcgactattgaccctgacgtctttgtcagatattttggtgactgcccagtcttgaga
gtatctggcagaatgtttcccgttgaagttgagtacctagctgaaagtgacgggggcaag
tcttctgataactatcaaaaagaagctgtcaacaaggctgtacatgtccacacaaaggat
cctccaggcgacattctggtttttgttacatctcctttagaaaccgagaagtgcagtgaa
aattttaacagcagactgcagggaaggactgacttcaaatgtttggttcttcatggtcag
attcgaccagatgagcagcagttagtatttcaggccacccttccaggaatcagaaagatt
gtctttgccacaaacagtgcagagacttcaatcaccattccaggaatcaagtatgtaatc
gatactggccttgcaaaggagaaacgttatgatcctcgtcggaacatgagcacattgagt
gtagtcctcattagtcgcagctcagcagatcagaggaaaggtcgggcaggaagaacaggt
cccgggaaatgttacagactctacagtgaagagacgtatcgggaaatggaagcagtatca
ctgccagagatactcaaagttcacctagggcaggctatgctgaaactgacagagcttgga
attaatcctctggagtatgaatttgttcagtcaccaggacaatcagcaatagctacagct
atgactacacttgaggaacttggtgcagtcaaagacaataagatcacagaagaagggaaa
gaactagcaaaacttcctgtagaacctcgactaggacttattatccagaaaggaagattt
gaagatgttctctttgatgctgttgttcttgcagctgtgagtaatgtaggaagctcgatt
ttcttcagagggggcgctgacaatgataagaagaaagctgacaagctgaagatacagttc
tgccacaatggtggtgatagtctcactctgctgaatgtctacagagaatggaacaaagag
ccagaaaagcagaaaaacaaatggtgctttgcaaacagccttaactccaaatcattgcga
atcgccagagagacagtaaatgaggtgatgactcttttgaagaaggaggcaaaagggaag
gttacacatgagttcaaagacccacaagaagcggatgggaaacttcagagaatactcttt
gacagcttcacatccaacatctgtcattctcttggacttgcaaaggcaggatattatgcc
cctagacttgatcaacaggttcatgctcacccctcatcagtcctgtatccactcaacttg
gttcctgagtggcttgtcttcgagcagtccatgaagacatccaaagacttcattacagga
ctcacaccagttgatgaagcctgggttgttgaagccattgaatctggacgactaaagaga
gatcttgaagagatgagaaagaaacaactcctccctgtgcatgttgagcatgtcggatca
tttcttttctggaagattgttggtcctagttttacaaaactaaaacagtttgaagaagaa
gcatcaaatctagttaaaccacatctggctgtcattgaggcatcaaaggaaaaaggggaa
ctgaagatattttgctctgatcatgctactggcaaattatctcacctattcaatgaggtg
actggacctgtgaaaatatttttggaaggagaagatttggaggtaccattgggtcagtct
aaagagcatgctggtgtccgtgtgatccttggtaaagggggagctgtgaaagacatcctc
atggcagatgaatacagaacaatatttgttgatcgtcctgatgacagttcttcagaagac
actatcttgaacaaatttggctgttttggaaagataaagagccacaggatattcaagaat
cctcaaaagagatggggttgtattacatatgaatcttcagcagcagcaaaagaagctgtg
gagaaaacaaaatcggattcttcagaagttgctgctcctgagaaacatggccgagggtat
caagactctcagttcaaggtcaaaataacatggtgtagacgagagtctagaggatttggt
ttgttgatgttgaaccaggtgatgccagcgattttacgaagagggccaatgtacatcaaa
gggatacttgtaaatgttggaattgacaggaaaagtgggcagagcctttatcttagaaat
cttggtcaaactatcactgaagatgatatcaaacaagcaattctatcctctttgaattat
gatgaaaatgagactggcatatttcaaaaggtaacggtagtgagagagaaagtgaccacg
acagaagatcaactgggtatcttcaagacccggttacaggcacagctcaaaaccttttcg
ccagacaagagattccatgtggaggtcaaagagccatttccaacaagtgtcaactaccta
gcatttgcatcgttcaccaactcaagtgagggaatagcagcttgccaaggtttgtccagg
cagttctatatcaacgaccgagtggtcacgatggagccagacataaggtcatcactgtat
gtaaacagagaagtttatgcagccatcaaagatgacctggatgcatacttgaaagaattc
ccgaccttcggttacacagaagttggagtgacttcaaagacactgaaggatggaactgtt
gtacttgatatccatgcctccagctccatagaactggccaaggttcgagctaatctacag
accattgtacagggagacgttctggaatgtggtgcaaatccgaatctgcgtcaactcttt
accagggctggaagagactttcttaaagacacagaaaagaaatgtaaggctttcattcaa
gttgatggtagaacctttacactttcaatccgagggaaacaggaggcatgcacaagagtg
ctcattgcagtcaatgattatctccaggaactgtccgaaggaaatttgatggaggtgcac
ctgcagggaagagacaaacccaatgggctgatgaaggcattgatgaatcaatatggcata
gaacttgagaagctacagcaggactttgggctgagatcagttgtcctgaacttcaagcga
cagattgtaaaattggtgggatcagctgaagacattgacaaagctgtcacagtcatagac
gacatttcatctaaattgctggagggtgtaaaaacttcagaggaggaggaacttcccgat
tgttgtgtctgtctctgcccaatagaaccaaaagatttgtacaggctgcagtgctgtggg
cacgcctactgcctggactgtgtcaggagacagctggaagctgcagtcactggcaaagac
ttcccatgcctttgtgggcatgatgggtgtgagcagccatttgcatggaaggatttgtcc
aattttgtgcgagaaggaacattaactgtcgcaaacctggccagctcttctttgagttcc
tttgttagcgaaaacaccaaaaccttcaagtattgcttgaccccaaactgtgacatggtg
taccgagtgacctcgaagggatctgtgttccggtgccccgactgcagtgtgagaatatgc
actacctgccacgcccagtatcatgatggactgacctgtgccatgtacaacagtgccaag
gatgatgaaggcagccttgaagagtggctggcagcccattccaaaacaacaaagaagtgc
ccaaactgtaagacccccatagagaaaacagaaggctgcaataatatgcattgtaaagca
tgcaaatgcagcttctgttggttgtgccttgcctggtttcgaaaatctagtgcatgttac
gatcatttgagtgaaaaacacgggggctgttttgatcacatttga
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integrated database retrieval system
