Haliotis rubra (blacklip abalone): 124268444
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Entry
124268444 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124268444
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124268444
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124268444
mRNA degradation factors
5'-3' decay
Decapping complex
124268444
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
Beta-prop_HPS5
WDR55
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Motif
Other DBs
NCBI-GeneID:
124268444
NCBI-ProteinID:
XP_046559360
LinkDB
All DBs
Position
Unknown
AA seq
1423 aa
AA seq
DB search
MDTQDSAQSSLNSTDTSQLLRELQALNLDRSPGSSHGSFGTGRNIPGTGDRDLPPSGEAT
LTQLMMTMYSSAPKQQIVLQGNDNQNSFSVYGRDVDVFLGEARVGESLVTTAGSNKVKIT
PVVNYDWEPKYYIGNLVAVHRDNEFVAYVLKGKSNGVVRVISRKCAERVLLKDFDGRVID
IAFAHTDEILLAAVDEIGNLFVHEIKEEDGKVVSSLLLHVKHPQATPSSEFHRVIWCPYI
PEDCEEAMTDASSQDASRVLVLTHDAVAEIWSVDMVTKEHGCGPHYPNTVESGLITINSH
TKPIVDAAFSPDGTAMATASLDGEVKFFQVYMQEGTSPRCLHQWKPHDGKPMSCLFFLDD
HKNLSADAQFWKYAVTGANQNQELKIWSCESWNCLQTIRFVNPPNMEVGALADVSLKAGL
DLGAKYLVLSDRMRKMLYVLQIHQEGTSTTAHVSSVSEFLLAQPCLSYAILDASTKKLKK
SPNDSHLDEITTGDLDGDATDDINRLHRPEETTTGVQLRLYAVHSKALQELLIRYRPESS
VPPPSTPSVSSISHDETGLRDALSDISMSVEQSLPESHGSSSSAIHDNSNPVLLTPDAFT
SPSPNNKTVSVQNSLEHVRSSGTMDHVRGSGSSTSSFTHVTPMNDEIYTPRSSASGDRTV
MSPGSTIAHTPSSKGDAQSQDVTPTNMPLPPIDSVEEEELATPKGAPESEKGDALNHSAQ
EVLDDFFTQVGPSPYMTIGFMTEEGRPRGQWIASPARGRFDVSEIVPPPSGQPEVRHRTD
YDENDQEVAEVLGESYVAAEEEGGEAEEFQEGETTGEDIHVPRAWPKPPDVPGVNQNLSS
EAVVRDSSSREETQDDDDDDEEEGDDGDDEAEIEEEIEVVEEGSEEEQQQSHSCFRMSPR
LAERIGKVKQSPRSAYGASESVSGSVRGGTDRRVYSPFESMRELQKNVQDLTSLLQAQQM
HITELQQQIARQHEQQLELQQQKEEQWRLQQVAANQPGLQEQMQRIEDVMTSRIERVLTQ
HLGRQTQTLQDVMTRTEGRHRQEQERLQTTVTQSVSQAITNNLERAVRAEMKNTVVPTVT
KILDPVKDQLHQDLAHKLTATDALLKDNIAKMVRSRQTVEAIANATGSAVQAPIQAAYRE
AFQNMVVPSFERASQSMFLQVNEAFQRGTTEYASQLEGHLERIRQRHQESRDPIVKQLQS
LVDNFQVASGEMKTEILNTLQSELNTSLQNALANLQEKTLNHVREAVKEEVSVAVREHGA
SLSDQLMNYVRSGAATPVQISPDLGHLQTLRTSVINAVRLGNINEAFQTALSASNLDLVM
FTCENVNPSLVFGQDPCPLKQPVLLSLVNQLSIDFTSHTELKIKYLEEAVISLDPHHPLT
AEHMHGVLNGLTQKLKVFMAQHPNDKLTRSFKMLAMASQSLIT
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atggatacccaagacagcgcccagtcgtctctgaatagtaccgatacaagtcagctcttg
agagaattacaagctctgaacttagacagatcacccggctcatcgcatggaagtttcgga
acaggaagaaatatccctggaacaggggatagggacttgccaccatcaggggaagcaact
ctgacccagctgatgatgacaatgtacagttcagcaccaaaacaacagatagtgctgcag
ggcaatgacaaccaaaacagtttcagcgtgtatgggcgagacgttgacgtgttccttggt
gaggctcgggtgggggagtcacttgttaccactgctggtagcaataaggttaagataacc
cctgtggtgaactatgactgggaaccaaagtattatatcggcaatttggtggctgtgcac
agagacaacgagtttgtggcgtatgtacttaaaggtaaatcaaatggagttgtccgtgtc
atctcaagaaaatgtgcagagcgggtgcttttaaaggacttcgatggacgggttattgac
atcgcctttgcccatactgatgaaattctcctggctgccgtggatgaaatagggaacttg
tttgtgcatgaaattaaagaggaagatgggaaagttgtctcctccttactcctgcacgtg
aaacacccacaggccacgccatcctcggagttccatcgagttatctggtgcccctacatc
ccggaggactgtgaggaggctatgaccgacgcctcgtcacaggatgcctcgcgggtgctt
gtcctcactcatgatgcagtggcggagatatggagtgttgacatggtaaccaaggaacat
gggtgtggccctcactacccaaacaccgtagagagcggcctcattaccatcaacagtcac
accaagccaattgttgatgctgcattttcccctgatggcacagcgatggcaacagctagt
ctggacggagaggtgaagttcttccaggtctacatgcaagagggcacctctcccaggtgt
ctgcaccagtggaaacctcacgacggcaagccgatgtcgtgtctcttcttcctggatgat
cacaagaacctaagtgcagatgcccagttttggaagtatgcagtgactggagccaatcaa
aaccaggagctaaagatctggagctgtgagtcatggaactgtctacagacaatcagattc
gtgaacccaccaaacatggaagttggtgccctggcagacgtgtccttgaaggcagggcta
gatcttggtgctaagtacctggtgctgtcagacaggatgcggaagatgctgtatgtgtta
caaatccaccaagaaggcacatcgaccacggcacatgtcagctccgtgtcggagttcctg
cttgcacagccttgccttagttacgccatcctggacgccagcaccaagaagctaaagaaa
tccccaaatgactcccatcttgatgaaataaccacaggggaccttgacggcgacgccaca
gacgacatcaaccgcctccacaggccagaggagacgacaacgggcgttcagttgagactc
tatgcagttcattcaaaagctctgcaagagttgctgatccgctacagaccagaatcctcg
gtgccacccccctccacaccttctgttagctccatttctcacgatgagacaggtttgcgt
gacgccttgtcggacatcagtatgagtgtagagcagagtctcccggaaagccacggcagc
agctcctccgccattcatgacaactccaacccagtgctcctcacacctgatgcatttacc
agtcccagtccaaacaacaaaactgtgtcagtgcagaactctttggaacatgttcgaagc
agtggaactatggatcatgtgcgaggcagtggatctagtaccagtagtttcactcacgtc
acacccatgaatgatgagatctacaccccccggagctcagcatctggtgaccggaccgtc
atgtctccaggcagtaccatcgcccacacaccctcctccaagggcgatgcccagtctcag
gacgtgacgcccacaaacatgccactcccccccatagactctgtggaggaggaggaactt
gccacacccaagggggcaccagagtcggagaaaggggatgctctcaatcattctgcacaa
gaagtgctggatgatttcttcacccaggtaggaccaagtccatatatgacaatagggttc
atgacagaggagggacgtccaagaggtcagtggatagccagtccagcacgggggaggttt
gacgtcagcgagatagttcctcctccttctggtcagcctgaggtgaggcaccgcactgac
tacgacgagaacgaccaggaggtggctgaagttctaggtgagagttatgttgctgccgaa
gaggaaggaggtgaggctgaagagttccaggaaggggagacaaccggggaggacatacat
gtcccccgtgcctggcccaaaccaccagatgtacctggagttaatcagaatctgtcatcg
gaggctgtggtccgagacagcagctcaagggaggagacccaggatgacgacgatgatgat
gaggaagaaggtgatgatggagatgatgaggcggagattgaggaagagattgaggttgtt
gaggagggcagcgaggaggagcaacagcagagccactcttgtttcagaatgtccccaagg
ttagctgaaaggataggcaaagtaaagcagtcgccacggtctgcgtatggagcaagcgag
tctgtttcggggtcagttcgaggcgggacagatcgcagggtttacagtccgtttgagtca
atgagggagctgcagaagaacgtgcaggacttgacgtcactgctgcaggcgcagcagatg
cacatcacggagctgcagcagcagatcgcacggcaacatgagcagcagctggagttgcag
cagcagaaggaggagcagtggaggctgcagcaggtggccgccaatcagccggggctgcag
gaacagatgcagaggatcgaggacgtcatgacgtcgcgtatagagcgcgttctcacgcag
cacctgggcaggcagactcagacattgcaagatgtgatgacccgcacggaaggccgacat
cggcaggagcaggagaggctacagaccacagttacgcagtccgtcagtcaagccatcacc
aacaacctggagagggccgtccgcgctgagatgaagaacacagtggtcccaacggtgacg
aaaatcctggatccagtaaaagatcagctccatcaagacctagctcacaagctcactgct
actgatgcactactgaaagacaatatcgctaagatggtcaggtctcggcaaaccgtggag
gccatagccaatgcaaccggcagcgctgtccaggcgcccatacaagctgcttacagggag
gccttccagaacatggtggtgccatcgtttgagcgagcctctcagagtatgttcctacag
gttaacgaggccttccagaggggcaccactgaatatgcgagtcaacttgagggtcacctt
gagcgtatccgtcagcgacatcaggagtcacgtgaccccattgtgaagcagctgcagtca
ctggtggacaacttccaggtggcgtccggcgagatgaagacggagatcctgaacacatta
cagtcggaactcaataccagcctgcagaatgctctggcaaatctgcaggagaagaccctc
aaccatgtgcgtgaggcggtgaaggaggaggtcagtgtggcggtccgggagcatggtgcc
agtctctctgaccagctgatgaactacgtacggtcaggggctgccacgccggtacagata
tctcctgacctggggcacctgcagactctgaggacgtcggtgatcaatgctgtcaggctt
ggcaatatcaatgaagctttccaaactgcactgtcggcatctaacctggatctagtgatg
ttcacgtgtgagaacgtgaacccatccctggtgtttggtcaggatccctgcccactcaag
cagccagtgcttctgtccctcgtcaaccagctgtccatagacttcacctcgcacacagag
ctaaagatcaaatacctggaggaggcagtgattagtttggacccccaccaccctttaact
gcagaacatatgcatggggtgttgaatggactaacccagaaactgaaagtctttatggca
caacatcccaacgataaactgacccgatctttcaagatgttggcaatggcatctcaatcg
ctcattacatga
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integrated database retrieval system
