Haliotis rubra (blacklip abalone): 124268601
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Entry
124268601 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4-like
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124268601
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hrj03000
]
124268601
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124268601
04121 Ubiquitin system [BR:
hrj04121
]
124268601
Enzymes [BR:
hrj01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124268601
Transcription factors [BR:
hrj03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
124268601
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124268601
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124268601
Ubiquitin system [BR:
hrj04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124268601
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Torus
zf-C3HC4_2
zf-UDP
Nup35_RRM_2
Vasculin
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
124268601
NCBI-ProteinID:
XP_046559554
LinkDB
All DBs
Position
Unknown
AA seq
852 aa
AA seq
DB search
MAGEEQVECPLCMELLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKQYPEDPA
EFKPLTEDELSRIKKERRQKDLQRKQKAAENRKHLANVRVVQKNLVFVVGLSQRLAEADV
LKKHEYFGKFGKIHKVVINQSTTYAGAQVHGPSASAYVTYTRSDDALRAILAVNNVHIDG
RTLKASLGTTKYCSHFLRGSQCQKSDCMYLHELGEEAASFTKEEMQMGKHQEYEQKLLEQ
FLNSQNTANNHTTNNKKSRKKSSSPVADQVNIPQPNPPEPAVETQPKSQPSPSTVQPHPT
NTSKEAWPSLQGQDKGERIPNGNRPSHSTVNHSNRSNTPPNHSKAVGNGRKRNTNTDNET
RINSHSPDRPQELTDTPNDREPAPPTISQNNASTVPRPRQTLPSQSSPSQPSFPMPRTQS
TPPPQSQPVAPIGSNRKPVMFENSANGLSYYSAGGSGTAYPCNKLVKPSPQVLPQNATDV
PASVTPPAQPAEPLPVSSSSEWQSSSSNYTSYSNSKDIQDDDLGFDPCDESFKGLADLIE
KENGLQGTAATTTHHYTNMQQHHHSGSSRSVGLQGGVMPPVHPPSTRSLPPGFSLSHIQQ
QQQQLQQQQHFQHRQQMPFFRQGVFSDMTNHKMMDFLPGYSQQSFSHMQQQHPQQHPQQH
PQQQQQQQNSPFHNSLPDRPLPGRSAMSAEHTHMQPQQQQQADVFKMEDMQNQLRSLLPN
INISFGALPQTSNNTQQRTQQTPNSHKSWPNSCTPQESDSPWLTYDPAILSSGNIQDGNT
ESAPHWLKSIHQLTEVDTPSPNHRLPFVQQFPSFSAASMWPPQTHNPPPGFQAPIRSNTV
QHPEPHKISEGL
NT seq
2559 nt
NT seq
+upstream
nt +downstream
nt
atggccggagaagagcaagttgagtgtcctctatgcatggagttgttggaaatagatgat
gtgaatttctttccctgcacttgtggataccaaatatgcagattctgttggcacagaata
aggacagatgaaaatgggttgtgtccagcttgcagaaagcaatacccagaagacccagca
gagttcaaacctctcacagaagatgagttatcaagaatcaagaaagagaggcgccagaag
gaccttcagagaaaacagaaagctgcagagaataggaaacatctggcaaatgtcagggtg
gttcagaagaacttggtgtttgtggtgggactatcccagcgactcgctgaggcagatgtc
ctcaagaagcatgagtattttggcaagttcgggaaaatccataaagttgtgatcaaccag
agcactacatatgcaggtgctcaagtccatggtcccagtgcaagtgcatatgtaacttac
actcggtcggatgatgctctcagagctatcctagctgtaaataatgtccacatagatggg
aggacactaaaagcctcccttggtactacaaagtactgcagtcactttctacggggctca
cagtgtcagaaatctgactgtatgtacttacatgaactgggagaggaagcagccagcttc
accaaagaagagatgcaaatgggtaagcatcaagagtatgagcaaaaactgctagaacag
ttcctcaacagtcaaaatacggccaataatcatacaacaaataacaagaaatcaagaaag
aaatctagttcccctgttgctgatcaggtgaacatcccccaaccaaatcccccagagcct
gcagttgagactcagcccaagtctcagcctagcccttccacagtgcaaccccacccaaca
aacactagcaaagaggcgtggccttcgttacaggggcaggacaaaggggaacggattccc
aatggcaatcgtccgtctcacagtacagtcaatcatagtaatagatcaaacacacctccc
aatcacagcaaggcggttggaaatggccgtaaaaggaataccaatacagacaatgaaaca
cggataaactctcattcaccagacaggccccaagaactgacagacacacctaatgacaga
gaaccagctccacccactatatctcagaacaatgcatccacagtgccccggcctcgccaa
accctgccctcacaatcctccccctctcaaccctctttccccatgcccagaacccaatct
acacctccccctcagtctcaacctgtggcccctattggctctaacaggaaacctgttatg
tttgagaacagtgccaacggtctttcatactacagtgctggaggtagtggcacagcttat
ccatgcaacaagctggtcaagccttcgcctcaagttttaccacagaatgctacagatgtc
ccagcgtccgtgacgccgccagctcagcctgccgaacctctgcctgtgtccagcagctca
gagtggcagtcatcgtcctccaactacacatcttacagtaatagcaaagacattcaagat
gatgatttaggttttgatccctgcgatgagtctttcaaaggtttggctgatctgatagag
aaagagaacggtctccaaggtacagcagccacaacaacacaccattacacaaatatgcag
cagcaccaccacagtggaagtagtcggtcagtgggtctgcagggaggggtcatgcctcct
gtccaccccccctcaacccggagtctaccccctggtttctctctcagtcacatacagcag
cagcaacagcagctgcagcaacaacagcactttcaacacagacaacagatgccattcttc
agacaaggtgtgttttcagatatgacgaatcacaaaatgatggacttcttgcctggctac
tctcagcaaagtttcagtcatatgcaacaacagcatccccaacagcatccacaacaacat
ccccaacagcaacaacaacaacagaactccccatttcacaactccttgccagatcgacct
ctgccagggcgtagtgcgatgtctgcagaacatactcacatgcaacctcagcaacaacaa
caagcagatgtgttcaagatggaggacatgcagaatcaactaagatcactgttgccaaat
atcaacatcagctttggtgctcttccacagacaagtaacaacacacagcaaagaacacaa
caaactccaaattctcacaaaagttggccaaattcctgcacaccacaagagtcagatagc
ccttggctgacttatgaccctgctatattatcttcagggaatattcaagatggtaataca
gagagtgctccccactggctaaagtcaatccaccagttgacagaagtagacacacccagc
cctaatcacagacttccatttgtgcaacagttcccgtcattctcagctgccagcatgtgg
cccccacagacacacaacccacccccgggtttccaggctccaatcagaagtaacacagtt
cagcacccagagccacacaagatttcggaaggtctttag
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