Haliotis rubra (blacklip abalone): 124270372
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Entry
124270372 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: DNA polymerase delta catalytic subunit-like
KO
K02327
DNA polymerase delta subunit 1 [EC:
2.7.7.7
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03030
DNA replication
hrj03410
Base excision repair
hrj03420
Nucleotide excision repair
hrj03430
Mismatch repair
hrj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
124270372
03410 Base excision repair
124270372
03420 Nucleotide excision repair
124270372
03430 Mismatch repair
124270372
03440 Homologous recombination
124270372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hrj03032
]
124270372
03400 DNA repair and recombination proteins [BR:
hrj03400
]
124270372
Enzymes [BR:
hrj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
124270372
DNA replication proteins [BR:
hrj03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
124270372
DNA repair and recombination proteins [BR:
hrj03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
124270372
MMR (mismatch excision repair)
DNA polymerase delta complex
124270372
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_B
DNA_pol_B_exo1
zf-C4pol
POL3_N
REV3_N
DNA_pol_B_2
divDNApol
DNA_pol_B_exo2
Motif
Other DBs
NCBI-GeneID:
124270372
NCBI-ProteinID:
XP_046561366
LinkDB
All DBs
Position
Unknown
AA seq
1086 aa
AA seq
DB search
MMEDFENEMMEDEAAGGSGDGPAGPETRTSRSKWARPAAPDLDPKTDTVTFQQLDVDNYV
GKHLAGMPGATQGPVPIIRMHGITQDGNSVMAHIHGFAAYFYVPAQPGFKEKDCGAFKDA
LDAAVKKDMRSNREGVVQAVLAVDCVIRESIYGFHGNRKIPFLKITVALPRLIAPSRRLL
EQGFVCTGYSQYAFQTYESNIDFEIRFMVDAHVVGCNWIEIPAGKYILRTKDAKDGRLPP
VSRCQIELDVSWEDIVSHSTEGEWSKVAPFRILSFDIECAGRKGVFPEADKDPVIQIANM
VIRQGEHDPFVRNVFTLNTCAPVVGSEVLSFKTEKEMLEKWSAFVREIDPDLITGYNIQN
FDFPYLINRAAHLKVRDFTYLGRIKDNQSVIKESMFQSKQMGKRENKVINIEGRTQFDLL
QILLRDYKLRSYTLNAVSFHFLQEQKEDVQHSIITDLQNGNEQTRRRLAVYCLKDAILPL
RLLDKLMCVINYMEMARVTGVPLPFLLARGQQIKVISQLLRKAKEQDLVLPSQKVDTGDE
YEGATVIEPEKGYYDIPIATLDFSSLYPSIMMAHNLCYTSLLNPAAIQKERLTAEQYIKT
PSGNLFCKSTVRKGLLPEILEHLLSARKKAKADLKKETDPFKKKVLDGRQLALKISANSV
YGFTGAQVGKLPCLEISQSVTAFGRMMIEQTKQYVEERYTIANGYKHDAKVIYGDTDSVM
CKFGVETVAEAMDLGKEAAEVISAKFVSPIKLEFEKVYFPYLLINKKRYAGLFWTNPXKH
DKMDCKGIETVRRDNRPLVANLINMCLQLLLIDRDPDGAVQHVKQTISDLLCNRVDISQL
VITKELTKTDDDYAGKQAHVELANKMKKRDAGNAPKLGDRVPYVIIAAAKGTAAYMKSED
PIYVLENNIPIDTQYYLENQLSKPLLRIFEPILGEKKAESVLLKGDHTRTKTVVASKVGG
LAAFTKKKSTCIGCKTPLSVEGVSVCKHCKSQESALYQKEILQLQVLEEKFSRLWTQCQR
CQGSLHEDILCTSRDCPIFYMRKKVQKDLADQDKLIMRFGLPMVVVVQHDRQCESDRGSC
GLLIKS
NT seq
3261 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacttcgagaatgaaatgatggaggacgaggcagctggaggttcgggagat
ggacctgctggaccggagaccaggacctccaggagcaagtgggcccgacctgctgcccct
gaccttgaccccaagactgacacagtgacctttcagcagctggatgtggacaactatgtt
gggaaacatctggcagggatgccgggggccacacagggaccggtacccatcatccggatg
cacgggatcactcaagatggcaacagtgtcatggcccacatccacggcttcgccgcatac
ttctacgtcccagcacagccgggctttaaagagaaggattgtggggcatttaaggacgct
ctggatgcggctgtgaagaaggacatgcggtccaaccgcgagggcgtggtccaggcggtt
cttgctgtggattgtgtcatcagagaaagtatctatggtttccatggtaacaggaagatt
ccctttctgaagatcacagttgcactacctcgtctgattgccccgtctcgccggctcctt
gagcaaggcttcgtatgtacaggctatagccagtatgcctttcagacctacgaaagtaac
atagacttcgagatcaggtttatggttgacgcccatgttgtaggatgtaactggattgag
attccagcagggaaatacatcctccgtaccaaagatgctaaggatggccgacttcctccg
gtgtctcgctgtcagatagagctggacgtgtcgtgggaagatattgtgtcccattctaca
gaaggggagtggtccaaggtcgcccctttccgcatcctcagcttcgacattgaatgtgct
gggaggaaaggtgttttccccgaggctgacaaggatccagtgatacagatcgccaacatg
gtgattcgtcagggggagcacgacccatttgttcgcaacgtgtttaccctcaatacatgc
gcacctgttgtagggtcagaggtgttgtccttcaagacggagaaagagatgttggagaaa
tggtccgcatttgtccgagaaatagaccctgatttgatcaccggctacaacatacagaac
tttgacttcccgtacctgatcaaccgggcagcgcatctgaaggtgcgagacttcacgtac
ctgggtcgcatcaaggacaaccagtctgtcattaaggagtccatgttccagagcaaacag
atggggaagagagagaacaaggtcatcaacattgagggcaggacgcagttcgacctcctg
cagatattgttgcgagactacaaactaaggtcatacaccttgaacgcagtgtcctttcat
ttccttcaagaacagaaggaagatgttcaacactccattatcacagatctccagaatggt
aatgagcagactcggcgccggttagcagtctactgcctgaaggacgccatcttgccactc
cgactcctagacaagttgatgtgtgtcatcaactacatggagatggctcgtgtcactggc
gtgcccctccccttcctgctcgcaagaggtcagcagatcaaggtcatttcccagctgctg
cggaaggcaaaggaacaggaccttgtgctaccatcacagaaagtagacacaggggacgag
tacgagggtgccacggtcatcgaacctgagaaagggtattacgacatacccatagccacc
ctggatttctcgtcgctgtacccgtcaatcatgatggcacacaacctgtgctacacctcc
ctcctcaaccccgctgccatccagaaggaaaggttaactgccgagcagtacatcaagacg
cccagtgggaacctgttctgcaagtctactgtcaggaagggtctgctgccagaaatcttg
gagcatttactttctgccaggaaaaaagctaaggctgatctgaagaaggagacagatcca
ttcaagaagaaggtgctggacggccgtcagcttgcattgaagatcagtgccaactctgtg
tacgggttcacaggtgctcaagtcggcaaactgccttgtctggagatatctcagagtgtg
acagccttcggtcgtatgatgatagaacagaccaagcagtatgtggaggagaggtacacg
atcgccaacggatacaagcatgatgctaaggttatctatggcgacacggactccgtgatg
tgcaagttcggtgtggagacggttgccgaggcaatggatcttggcaaggaagcagcagaa
gtcatctctgccaagtttgtcagccccatcaagctagagtttgagaaggtttacttccca
tatcttctgatcaacaagaagcgttatgctggtctgttctggacgaacccgnacaaacat
gacaagatggactgcaagggtatcgagacggtgcgtcgagacaacagacccctcgttgcc
aacctcatcaacatgtgtctacaactgctgctgattgatagagatccagatggcgctgtg
cagcacgtgaagcagacgatctcagacctcctgtgtaatcgcgtggacatctcgcaactc
gtcatcaccaaggagttgacaaagactgacgacgactatgcaggaaaacaggcacatgtg
gaactggcaaacaagatgaagaagcgtgatgcaggaaacgcccccaagctgggagaccga
gtgccgtacgtcatcatcgctgcagctaagggcacagcagcatacatgaagtccgaggat
ccgatatacgtcctggaaaacaacatcccgattgacacacagtactatctggaaaatcaa
ctgtctaaaccactactgaggatcttcgagcccatcctaggggaaaagaaagccgagtcc
gtcctgctgaagggtgaccacacccgaacaaagacagtggtagcatcaaaggtgggtggt
ctggcagccttcaccaagaagaagagcacctgtatcggctgcaagaccccactcagtgtg
gaaggagtgtctgtgtgcaagcattgcaagagtcaggagtcagcgctctaccagaaagag
atcctgcagctgcaagttctggaggagaagttctcccgactgtggacccagtgccagaga
tgtcagggcagtctacacgaggacatcctgtgtacgagtcgagattgtccgatattctac
atgaggaagaaagttcagaaggacctggcggaccaagacaagctcatcatgagattcggg
ctacccatggtagtggtcgtacagcacgaccggcagtgtgagagtgacaggggcagctgt
gggctattgatcaagtcatag
DBGET
integrated database retrieval system
