Haliotis rubra (blacklip abalone): 124273147
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Entry
124273147 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase DHX8-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124273147
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrj03041
]
124273147
Enzymes [BR:
hrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124273147
Spliceosome [BR:
hrj03041
]
Complex C
Other components
Step II factors
124273147
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
GIPC1_GH2
DEAD
AAA_22
AAA_19
T2SSE
nSTAND3
ABC_tran
DUF6775
AAA_16
TsaE
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
124273147
NCBI-ProteinID:
XP_046564320
LinkDB
All DBs
Position
Unknown
AA seq
1228 aa
AA seq
DB search
MDELQKLEYLSLVSKVCTELENHLGINDKDLAEYVIDLAEKNDTFEKFKKALDERDAQFS
DSLIANLLRLIKKMKPKVKEIVDEKEDISDETDMRKALYPGLAMPNNPDVRKMLDGEESM
KKIEVKTEVDTEGSAKGWGRGGDQKVASQMMDELEALLGGKLPVKEETRTEKSEKKRRKS
RSRSRSREKKKKKRDPRSISRETKSRSRSRDRHRSRSRSRERRRRSRSRDRDRDRHRDRD
RDTKKRDRDRDKTRDKDKYNDIPMEPVVGQVYHGKVTTIMQFGCFVQLEGLRKRWEGLVH
ISQLRREGRVTNVSDVVSRGQKVMVKVLSFTGNKTSLSMKDVDQDTGEDLNPTRSRNIDV
GGDDIEARNPDRPSTIPLVDAPENDDLTTDRKTFKRISSPERWEIKQMIAASCIDKSQLP
DFDDEVGLLPKEDDSDEDVEVELVEEEPPFLQGHGRHWVDLSPVKIVKNPDGSLAQSAMM
QSALQKERRELKQAQREAEMDSVPAGLNNHWIDPMPESDGRKLAANMRGVGMAPNDVPEW
KKHITGGAKASYGKKEKKSLLEQRQGLPIFKLKDQLSKAVNDNQILIVIGETGSGKTTQI
TQYLAEVGYTTRGKIGCTQPRRVAAMSVAKRVSEEFGCRLGQEVGYTIRFEDCTSPETKI
KYMTDGMLLRECLIDPDLVQYSIIMLDEAHERTIHTDVLFGLLKAAVKKRPELKLIVTSA
TLDSVKFSQYFFEAPIFTIPGRTYPVEILYTKEAETDYLDASMITVMQIHLTEPPGDILL
FLTGQEEIDSACEILYERMKAMGPEVPDLIILPVYSALPSEMQTRIFEPAPPGSRKVVIA
TNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGMDQLIVTPISQAQAKQRAGRAGRTGPGK
CYRLYTERAYRDEMLPTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDARPMQTLISAM
EQLHALSALDDEGLLTRLGRRMAEFPLEPMLSKMLIMSVHLTCSDEILTIVSMLSVQNVF
YRPKDKQAIADQKKAKFHQPEGDHLTLLAVYNSWKNNRFASPWCYENFVQIRTLKRAQDV
RKQMLGIMDRHKLDVVSCGKNTARVQKAICSGFFRNAAKKDPQEGYRTIVDSQVVYIHPS
SALFNRQPDWVVYHELVLTTKEYMREVTAIDPKWLVEFASKFFKFSDPTKLSRQKKQQKI
EPLYNKYEEPNQWRISRAFRKFHTKVTF
NT seq
3687 nt
NT seq
+upstream
nt +downstream
nt
atggacgaactacagaaacttgaatatctgtctttggtatccaaagtatgtactgagctg
gaaaaccatcttgggataaatgataaggatttggctgaatatgtgattgatctagcggag
aaaaatgacacatttgaaaaattcaagaaagccttggatgaacgagatgcacagttctca
gactctctcattgctaatcttctacgtctcatcaagaagatgaagccgaaggtgaaggag
atagtggatgagaaggaggacatctccgatgagacagacatgaggaaagctctatatcct
ggcctggctatgcccaataatccagatgtcaggaaaatgctggatggcgaggagagcatg
aagaagatagaagtgaagactgaggtggatacggagggaagtgccaagggctggggcaga
gggggagatcagaaggtggcgtcacagatgatggacgagctggaggcgctactcgggggc
aagctgccggtcaaggaggagacaaggacagagaagtcagaaaagaaaaggagaaagagc
cgaagtcggagccgcagtagagagaaaaagaaaaaaaaacgtgacccgagatcgatctcg
agagagacgaagtccaggagtaggtcacgtgatcgccatcgttctcgtagtcgaagccga
gagagacgtcgccgctccaggagtcgagacagagatagagatagacacagagacagagat
cgagatacaaagaagcgagaccgggatcgagataaaactagagataaagacaaatacaat
gacatcccaatggagccagtagtaggacaggtgtaccatggcaaggtgacgaccatcatg
cagtttggatgttttgttcagttggaaggtctgagaaagagatgggaaggacttgtacac
atatcacagctccggcgagaggggagagtgaccaacgtcagcgatgtggtcagtcgtggc
cagaaggtgatggtcaaggtgctgtcctttactggcaacaagaccagcctgtccatgaag
gatgtggaccaggatacaggagaggacctcaacccaaccaggagccgcaacatcgatgtt
ggaggagatgacatcgaggctcgcaaccctgacaggccgtccacaatacctctggtggat
gctcccgagaacgacgacctcaccacagacagaaagacattcaagcgtatctcgtcccca
gaacggtgggagatcaaacaaatgatagctgctagctgtattgacaagtcacagcttccg
gactttgatgatgaagtcggactgctgccgaaggaggatgactcagatgaggatgtagaa
gtggagctggtggaggaggaaccaccctttctgcaaggtcatggtcgccactgggtcgac
ctcagtccagtcaagattgtcaagaatcctgatggttcactggcgcagtcggccatgatg
cagagtgcgctgcagaaggagcggagggagttgaagcaggcgcagcgagaagcagagatg
gactctgtcccagcaggactcaacaaccactggatcgatcctatgcctgaaagtgatgga
cgtaagttggctgcgaacatgcgtggtgtcgggatggcgccgaatgatgtccctgagtgg
aagaagcacatcacagggggcgcgaaggcatcgtacggcaagaaggagaagaagtccctc
ctggaacagcgccagggtctgcccatcttcaaactgaaggaccaactctccaaggcagtc
aatgacaaccagatactgatcgtaattggtgagactgggtcagggaagacaactcagatc
acccagtacctggcggaagtgggttacaccacgcgggggaagattggctgtacacagccc
aggagagtggcagccatgtccgtggccaagagagtgtcggaggagttcggttgccgtctc
gggcaggaggtcggctacaccatacgtttcgaggactgcactagccccgagacgaagatc
aagtacatgacagacggtatgctgctgcgagagtgtctcattgaccctgaccttgttcag
tactccatcatcatgttggacgaagcccacgagagaactatccatacagatgtcctgttt
ggacttctgaaagcagcggtgaagaaaaggccggagttgaagttgatagtaacatcagcc
acccttgattctgtcaagttctcgcagtacttctttgaagctccaatcttcacgatccct
ggtcggacataccctgtggagatcctatacaccaaggaggccgagacagactacctggac
gcatccatgatcactgtcatgcagatacacctgacggaacctccaggcgacatcctgctg
tttctcactggtcaggaagagatcgactccgcctgtgagatcctgtatgagaggatgaag
gctatggggcccgaggtgcccgacctcatcatcctccccgtgtacagtgccctgcccagc
gagatgcagaccaggatcttcgaaccagcgccacctggatccagaaaagttgtcatagca
accaacattgctgagacgtcgctgacaattgatggcatctattatgtggtggatcctggc
tttgtgaaacagaaggtgtacaactctaagactggcatggatcagctgattgtcacgccc
atctctcaggcccaggccaagcagcgagcaggccgagctgggcggacaggtccagggaag
tgttaccgtctgtacacggagcgtgcctaccgagacgagatgctgcccaccaacgtcccc
gagatccagcgcaccaacctggcctccactgtgctgtccttgaaggccatgggtatcaat
gacctcctatccttcgacttcatggacgcccggcccatgcagaccttgatatcagccatg
gagcaactgcatgccctcagtgcgctggacgatgaaggcttgttgaccaggcttggaagg
aggatggctgagttccccctggagcccatgctgtccaagatgttgatcatgtcggtccac
ctcacctgcagtgacgagatcctcaccatcgtctccatgctgtctgtgcagaacgtcttc
tacagacctaaggacaagcaggccatagctgaccagaagaaggccaagttccaccagcca
gagggggaccatttgacactgttggccgtgtataattcctggaagaacaacaggttcgcc
agcccgtggtgctacgagaactttgtacagatccggacactgaaacgagcgcaggacgtc
cgcaaacagatgttgggaatcatggacagacataagctggacgtggtgtcgtgtgggaag
aacactgctcgggtacagaaggccatctgttccggtttcttccgtaacgcagccaagaag
gaccctcaggaaggctacaggacaattgtggacagccaggtggtgtacatccatccctcc
agtgccctcttcaacagacagccagactgggtagtatatcatgagctggtcctcaccacc
aaggagtacatgagggaagtgacagccatcgaccccaagtggctggtggagtttgcttcc
aagttcttcaagttctccgaccctaccaagctgagtcggcagaagaagcagcagaagatc
gagcccctgtacaacaagtacgaggaacccaaccagtggaggatctcacgggcattcagg
aagttccacaccaaggtcaccttctag
DBGET
integrated database retrieval system
