Haliotis rubra (blacklip abalone): 124273868
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Entry
124273868 CDS
T07967
Name
(RefSeq) fibril-forming collagen alpha chain-like isoform X1
KO
K06236
collagen type I alpha
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj04512
ECM-receptor interaction
hrj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124273868
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124273868
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hrj00536
]
124273868
Glycosaminoglycan binding proteins [BR:
hrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124273868
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
124273868
NCBI-ProteinID:
XP_046565144
LinkDB
All DBs
Position
Unknown
AA seq
2003 aa
AA seq
DB search
MWREALIALLALAAVIHAQGVESECYDEAGEEVADGDSWIPDITDPCYVCTCSGTQAICK
DTASSCASIDCGDDEPVKPVGVCCASCPDKPSNTEQEMLGDEASEGGSDIAKSRMRRQAG
TRSAGSRRRASTRRPSSRRTGSFSTRGGAGGAGGAGGKRTGGSSFSFSSGGGAGGGGAGG
AGGKRRGGGTGSSFSSGSGGGGSAGGAGGAGGAGGKRRGGGTGSSFSFGSGGAGGGAGGG
AGSGAGGAGGAGGAGGKRRGGGTGGSFSFGSGGAGGAGGAGGAGGAGGKRRGGGTGGSFS
FGSGGAGGGGAGGGGAGGAGGKRRGGGTGGSFSFGSGGAGGAGGAGGAGGKRRGGGTGSS
FSFGGGGAGGAGGAGGKRGGGGTGGSFSFGTGGKTGTGGKRTGGTGGTGGTGGTGGKTSG
SSFSFGTGGTGGTGGTGGTGGTGGKTSGSSFSFGTGGKRGTGGTGGTGGTGGTGGKTSGS
SFSFGTGGGTGGTGGTGGTGGTGGKTSGSGFSFGTGGGTGGTGGTGGTGGKTSGSGFSFG
TGGTGGSGGSGGTTGKTSGSGFSFGSSGSSGTGGKTGGGFTFGSGTAGSKTSGSSGSSGS
SGSSVSDKALNIGSRSGAGGSGGSSWSSSSGSSGSSGSGGGASGTGGGASGTRGTAGTAG
TAGRTSSSGTRSYGTSGASGSRTRSSSGSSRSSSSRSSSRSYSSSSRGRSRSSGGSGRRR
TAQNTQGNVKAGPAYSPQYYSPGAPGPRGPPGPPGQPGPQGFQGMRGESGDPGPPGSSGQ
RGFAGPPGPPGLDGEEGMPGDPGPAGALGSPGSSGRPGMPGMPGPKGHRGASGRPGRDGE
QGKQGEKGISGASGAPGSSGPQGPRGSPGERGRDGSPGAPGIRGEDGMAGNAGSVGPIGP
PGPPGFPGSSGAKGDAGQSGDRGPLGAQGAPGNNGAAGQPGQPGRPGSPGDDGNPGTKGE
MGPAGGPGSPGFPGPQGPPGAAGAPGAVGNKGDQGRDGSPGSQGEVGAAGQAGQQGERGL
PGLPGQEGKRGATGAGGPPGSSGPSGERGLPGTPGMSGRPGAAGVAGKDGARGLQGERGE
AGQQGVAGAPGSAGQTGARGAPGFPGADGAPGERGPAGNPGVDGNPGEQGPQGIQGPPGL
QGPSGNKGDTGSAGKDGDVGRPGAPGSRGPRGPAGEAGLEGPPGSPGAEGEIGSSGRPGE
QGFQGLPGPAGPPGEAGRSGPPGETGIPGEVGASGERGERGAPGEVGVAGSRGAPGERGP
SGPSGEVGQSGPPGPAGARGDAGAQGLIGMPGERGPLGRVGAPGNRGLTGERGQDGEPGR
PGEAGAPGSPGQPGPSGLVAAKGDRGETGPSGEPGSPGSSGQRGPAGAQGPQGPTGLAGP
TGEMGQPGDDGQTGAKGDNGARGYPGEAGPIGAPGNEGREGRKGNRGSGGIPGNSGTPGD
PGRAGPPGSPGAQGPPGPSGATGLAGDGGERGETGPPGRAGEPGSPGLPGLDGAQGERGS
SGLNGPSGPPGPVGPQGERGANGFPGSQGEAGASGPPGSAGEPGLRGEDGNDGAPGQAGP
PGPTGPAGYPGETGQPGSPGKDGPLGPVGRSGAKGSRGAGGATGPPGLNGPVGAPGNSGP
PGPQGERGERGEVGSSGPAGLTGQRGPAGARGAVGEKGENGWDGAKGDKGWPGMPGPQGP
PGPLGSNGDPGPPGPPGVSGQNGKSGSRGRTGRSGSPGQQGPPGPSGARGPSGDDGLTGA
KGPSGPPGPPGPPGYGPVYSPQPNWNKGPDPYQYDEPEGGMAVYENLNRVREAIVRIGNS
RLGSRTSPGKNCRDIKLSNPDFKDGEYWIDPNADSALDAVKVFCRMETLETCVKPKLTEY
RRDRWTKDSTSGQYFMSDVFGKVKEFKYDIDVTQLKVLQFDSQSARQGVTYHCLNSHTYG
TRFITDSGDELDSAEGRFKRSTYIDILEGECENVSSKDNQWHTNRYEVRTNKSELLPLVD
VLLFDIGGENQQFGIDVGEVCFS
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atgtggagagaggctttgatagccctattggctcttgcagccgtgatacacgctcaaggt
gttgagagcgaatgctatgatgaagcgggtgaagaagttgccgatggcgacagttggatt
ccggacattactgacccatgctacgtgtgcacatgcagtggaacacaggctatctgcaag
gacacagcctcttcctgtgcgtctatcgactgtggtgatgatgagcctgtgaagcctgtt
ggtgtatgctgtgcctcgtgcccagataaaccttcaaacacagagcaggaaatgctcggt
gatgaagcatcagaggggggatctgatatagctaagtcacgtatgcgtagacaggcagga
acaagaagtgcaggaagtcgacgtcgcgctagtaccagaagaccttctagtagacgtact
ggtagctttagtactagaggtggcgctggtggcgctgggggggctggtggtaaacgtacg
ggtggcagtagcttcagttttagttcaggtggcggtgctggaggcggtggtgccggtggt
gccggaggaaaacgaaggggtggtgggactggaagtagctttagttccggatctggtggt
ggtggtagtgccggtggtgccggtggtgccggtggtgccggaggaaaacgaaggggtggt
ggaactggaagtagctttagtttcggatctggtggtgccggtggcggtgctggtggcggc
gctggaagtggtgccggtggtgctggtggtgccggtggtgccggaggtaaacgaaggggt
ggtggaactggaggtagctttagtttcggatctggtggtgcaggtggcgctggtggtgcc
ggtggtgccggtggtgccggaggtaaacgaaggggtggtggaactggaggtagctttagt
ttcggatccggtggtgccggtggtggcggtgctggaggcggtggtgccggtggtgccgga
ggtaaacgaaggggtggtggaactggaggtagctttagtttcggatctggtggtgcaggt
ggcgctggtggtgccggtggtgccggaggtaaacggaggggtggtggaactggaagtagc
tttagctttggtggtggtggtgctggtggtgccggaggtgccggcggtaaacgagggggt
ggtggaactggaggtagctttagctttgggaccggtggcaaaacaggcacagggggaaaa
cgtacaggtggaacaggtggtacaggagggaccgggggaaccggtggaaagaccagtgga
agcagtttcagttttggtactggtggtacaggtggtacaggtggtactggtggtacaggt
ggtacaggtggaaaaactagtggaagcagtttcagttttggtacaggaggtaagagaggg
actggtggaaccggtggtacaggtggtactggtggaacaggtggaaaaaccagtggaagc
agtttcagctttggcacaggtggtggaaccggtggtacaggtggtacaggtggtacgggt
ggtacgggtggaaagaccagtggaagcggtttcagttttggcacaggtggcggaaccggt
ggtacaggtggtacaggtggtacgggtggaaagaccagtggaagcggtttcagttttggt
acaggtggtacaggtggttctggcggttcaggtggtactactggtaaaaccagtggaagc
ggtttcagttttgggtcaagcggtagtagcggaacaggaggaaaaacaggaggaggtttc
acatttggctctgggacagctggctcaaaaacaagtggttctagtggttctagtggttct
agtggttccagtgtttccgataaggctttgaatattggttcaagatccggtgccggaggt
tctggtggtagctcatggagcagctcttctggcagtagtggttcgtcaggaagtggtggt
ggggctagtggtactggtggtggggctagtggtactagaggtacagccggcacagcaggt
acagccggtagaacgtcatctagtggaacacggtcatatggcacatctggagcgtcaggt
agtcgaactcgttcaagttccggttccagtaggtcttcttcctctagaagcagcagtcgt
tcctacagttcttcttccaggggtcgttctagaagtagtggtggtagcggcagacgccgc
actgcccagaacacacaaggcaatgtcaaagccggacccgcctactctccacagtactat
tcaccaggtgcacctggcccacgtggacctcccggccctcctggacaacccggaccccag
ggattccagggaatgcgcggagaatctggcgatccaggcccacccggttcctctggacaa
cgtggatttgctggcccacctggcccccccggtctcgatggtgaggaaggtatgcctgga
gacccaggtccagccggagctcttggatcacctggatcatctggacgcccaggaatgcca
ggaatgcctggacccaaaggacacagaggagcttctggtcgtcccggacgtgacggagaa
caaggaaagcaaggagagaaaggtatttccggtgcatctggagccccaggatcttctgga
cctcagggaccccgtggatcccccggagagagaggccgtgacggaagtcccggagccccc
ggtatccgtggagaagatggtatggctggtaacgctggatctgtaggacctattggaccc
cccggaccccctggattccccggatcatctggagctaagggagatgctggtcaatctgga
gatcgtggcccattgggagcacaaggtgcccccggaaacaatggcgccgctggtcaacct
ggtcaacctggaaggcctggttcccctggtgatgatggcaatcctggtactaagggcgag
atgggacccgctggtggacccggttctcctggcttccccggtccccagggacctcccgga
gccgcaggtgcccccggtgctgttggaaacaagggagatcagggacgtgatggaagcccc
ggaagccagggagaggttggagctgctggtcaagccggtcaacaaggagagagaggtctg
cctggacttcctggtcaggagggaaagaggggagccactggagcaggtggaccccccggt
tcctcaggaccaagcggtgaaaggggacttcccggaacccccggaatgtctggacgcccc
ggcgctgcaggagttgctggaaaggatggagcacgtggtctccagggagaacgcggagag
gctggacaacaaggtgtagctggagccccaggaagcgctggacaaaccggagctcgtggt
gccccaggattccctggtgctgacggtgcccctggcgagcgtggacccgctggcaacccc
ggagttgatggtaacccaggagaacaaggaccccagggcatccagggacccccaggtctt
cagggcccctctggaaacaagggagatactggctcagcaggcaaggacggtgatgttggc
agaccaggagcaccaggatcccgtggacccagaggacctgccggagaggctggtttggag
ggacccccaggatcacccggcgctgaaggagagattggatcttccggccgtccaggtgaa
caaggattccagggacttcccggtcccgctggaccccccggcgaagctggacgctcagga
ccccctggtgagactggaatccccggagaggttggcgcaagcggagagagaggtgagcgt
ggtgcccccggagaggttggagttgctggatcacgtggtgccccaggtgagagaggacca
agtggaccatctggagaagtcggacaatctggaccacccggacccgctggagctagagga
gatgccggcgctcagggtcttatcggtatgcctggcgagagaggtccacttggacgtgtc
ggagcaccaggaaacaggggtctcactggcgagcgtggacaggatggagaacctggtcgc
ccaggtgaggctggagccccaggatcacccggtcaacccggaccttcaggacttgttgct
gccaagggagaccgcggagaaactggaccctctggagagcctggttcaccaggttcatct
ggacagagaggacctgcaggagcccagggaccacaaggaccaactggacttgctggacct
acaggagagatgggacaaccaggagacgacggacagactggtgccaagggcgacaacgga
gcacgtggataccctggcgaggctggaccaatcggcgcaccaggaaatgaaggacgcgag
ggcaggaagggcaaccgtggatctggtggtattcccggcaattctggtaccccaggcgac
ccaggacgtgctggaccccctggctccccaggcgctcaaggaccccccggaccctcagga
gctactggattggccggagatggcggcgagcgtggtgagactggacctcccggtcgtgca
ggtgaacctggttctcctggccttcctggtcttgatggcgcccaaggagagaggggatct
tccggactcaacggaccatctggacctcccggaccagtaggaccccaaggagagcgcggt
gccaacggattcccaggttctcagggagaggctggtgcatctggaccccccggatctgct
ggagagcccggacttcgtggagaagatggaaatgatggtgccccaggacaagccggaccc
ccaggacctaccggacctgccggttacccaggagagactggacaacccggatctccagga
aaggatggaccactcggacctgttggacgttcaggagctaagggatctcgtggagccggt
ggagccactggaccaccaggactgaatggacctgtcggcgcaccaggaaactccggacct
cccggacctcagggagaacgtggcgagaggggagaagttggctccagtggacctgctgga
ttaaccggacaacgtggacccgctggtgcccgcggtgctgtcggagagaagggagagaac
ggatgggatggagctaagggcgacaagggctggccaggaatgcctggaccccaaggacca
cccggacctctcggaagcaatggagaccccggcccaccaggacctcccggagtttcaggc
cagaatggaaaatctggaagtcgcggtcgtaccggccgtagtggaagccccggtcaacag
ggacctcccggaccttctggtgctcgtggaccatctggtgacgacggactcactggagcc
aagggaccttccggacctcctggaccacccggaccacccggctacggaccagtatattca
cctcagccaaactggaacaagggaccagacccataccaatatgatgagccagagggcggt
atggcagtgtatgagaacctcaacagagttagagaggctatcgtccgtataggaaactcc
agactcggcagccgtacttcacctggcaagaactgcagggacatcaaactcagcaacccc
gacttcaaggatggcgagtactggatcgatcctaatgccgactctgctcttgacgccgtg
aaggtattctgcagaatggagacccttgagacatgcgttaagcccaagcttactgagtac
cgccgtgaccgctggaccaaggacagcaccagtggccaatacttcatgtccgatgtcttc
ggcaaggtcaaggagttcaagtacgacatcgatgtgactcagctgaaggttctccagttc
gactcccagagcgccagacagggagttacataccactgcctcaactcccacacctacggc
acccgcttcatcaccgattccggcgacgaacttgactcagctgagggtagattcaagagg
tcaacatacatcgacatcctggagggagaatgtgaaaatgtatcatctaaagataaccaa
tggcatacaaacagatatgaagttaggaccaacaaatcagaactattgcctttagtcgat
gtcttgctattcgatattggtggagaaaaccaacaatttggcatcgacgtaggagaggtg
tgcttcagctaa
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