Haliotis rubra (blacklip abalone): 124273869
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Entry
124273869 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: fibril-forming collagen alpha chain-like
KO
K19719
collagen type II alpha
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124273869
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
hrj00536
]
124273869
Glycosaminoglycan binding proteins [BR:
hrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124273869
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
124273869
NCBI-ProteinID:
XP_046565166
LinkDB
All DBs
Position
Unknown
AA seq
1438 aa
AA seq
DB search
MRLQECVCVVVLLVVTVAAAPEKDRGCTYQGVQYENGAVWLPNKEDKCFECICDNGEALC
SFLADCDGYASALTKEQKKMRVMAAVIGLPGEDGIRGIQGPKGEQGEPGADGINAVPGPP
GSPGESEMSADQAYRRYYARRFSNKAGGAAFGPQYLQAQVGPIGPRGLTGSPGPNGPQGG
RGIRGETGDSGPQGAPGSRGPPGPSGSRGPEGDGGRNGEAGAPGLPGARGAPGPSGMPGL
PGSKGHRGFNGFPGKRGEQGISGESGAVGAPGPSGAPGPVGPRGQSGERGPDGSSGQSGL
RGVDGLPGQPGAPGAMGASGPPGSPGMVGAKGDAGAKGPKGGVGPQGSRGENGMAGANGE
DGLNGPPGQPGSDGEKGTVGDPGPAGSPGFPGPRGXPGLLGSPGLPGLKGGAGAQGQAGY
KGEQGLKGSPGTPGDRGQPGPPGTQGRRGSRGGAGAAGPQGPGGERGLPGERGNPGSPGN
PGPKGEDGETGVRGERGQTGSMGEAGRPGPPGPPGEAGAVGPSGPDGKSGPPGPSGPSGN
DGRPGEIGAPGPSGSPGQQGAQGPTGERGNPGKSGNPGLQGPRGPSGDNGPTGEMGPQGA
PGPEGEPGPRGAEGPPGGPGFQGAPGLPGPPGEAGTEGEPGTPGGPGQTGRTGNRGERGF
PGERGGMGPVGEPGPPGQVGPAGNDGERGIPGEIGVQGDVGPQGPMGMPGERGPGGEAGA
KGDDGEAGPPGPDGNTGRPGLAGPPGEPGPPGLAGPPAEKGQPGDPGYRGQSGPPGASGE
RGNAGPDGEPGYPGLPGPSGGSGMKGEAGLPGAKGEQGDGGASGEPGSQGPAGVPGIQGR
KGPRGEQGVAGIPGEPGAPGAPGSQGLSGQQGLPGPAGPSGTPGIKGSRGSTGNMGQAGR
NGASGQPGNPGLKGNRGEDGSPGSSGPPGPSGAAGERGEPGMPGPPGETGPGGPQGPNGA
RGTNGRRGSDGLPGKAGPPGPVGGPGINGPTGPSGAPGADGAAGLPGRQGEAGLVGDAGR
VGPIGLPGLQGPAGPSGPVGEAGSRGERGSVGPVGPRGPQGLRGSPGVQGEQGIDGEGGD
AGHTGDKGDPGYMGLPGLPGPEGPIGENGPPGPRGPAGERGNDGVRGQPGIAGEDGPDGP
RGAPGPRGPSGEDGRRGSAGLPGNPGPPGPPGESVYGRAITGWATGSKGPGYMGDVPSAE
GEPEEARNAIKALKDVEEEIKKLRDPTGTKDAPGRTCHDLLKNNPEITNGWYFIDPNGGG
ISDAFEAECIFNGKRTETCLHPIQTGYERQHWFTRKENPEAHVWFAETFDANGFFDYGMH
KSQIKYLHQMSTRARQDLAISCMNTVVIYDQAAGNHKKAVRLGSFDEEIMGPIAKKPYRF
RVKTDTCKEYSGNVGQTLIEVRGRGHRIERMPIMDVGLYDVGGEDQEFGIDIGPACFS
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgcgccttcaggagtgtgtctgtgtagttgttctgctggttgttacagtggcagccgcc
ccggagaaagatcgagggtgcacatatcaaggagttcaatacgaaaacggagcagtttgg
ctaccaaataaagaggacaaatgttttgaatgtatttgcgacaatggcgaggccctttgt
tctttccttgctgactgtgacggttacgcctccgctctcaccaaagagcagaaaaagatg
agagtcatggctgccgtcataggtctgcctggcgaggatggaatacgaggcatacaaggt
ccaaagggagagcaaggagagcctggcgctgatggaattaatgccgtccccggacccccc
ggctccccaggagagagcgaaatgtcagctgaccaggcttaccgccgctactacgccaga
cggttctccaacaaggctggtggagccgccttcggacctcagtatcttcaagctcaagtt
ggtcccattggaccacgtggattgactggatccccaggacccaacggaccccaaggaggc
cgtggaatcagaggcgaaactggagacagcggaccacagggagcacccggaagccgtgga
cctccaggcccatctggatctcgcggacctgagggcgacggtggacgtaatggtgaagca
ggcgctcctggtctccccggcgctaggggagcccctggaccatctggtatgcctggactt
cctggctctaagggacacagaggtttcaacggcttccccggaaaacgcggagaacagggt
atttcaggagagagtggtgccgtcggtgccccaggtccatctggagcacctggcccagtt
ggaccccgtggtcagtctggcgagaggggtcctgatggttcttctggacaatcaggtctt
cgtggtgttgatggtcttcctggacaacctggagctcctggagcaatgggtgcgtccggc
ccccctggatcaccaggaatggttggagctaagggagacgctggtgctaaggggcctaag
ggaggagttggaccccagggatctcgtggtgaaaatggcatggctggagctaacggagag
gacggattgaacggaccaccaggtcagcctggaagtgatggcgagaagggtaccgttggt
gacccaggcccagcaggatctccaggattccctggaccccgtggancccctggacttttg
ggaagccctggattgcctggtcttaagggaggcgccggagcccaaggtcaagctggatac
aaaggagaacaaggtctgaagggttccccaggtacccctggagacagaggacaaccagga
cccccaggaacccagggaagacgtggcagccgtggtggtgctggagccgccggaccccag
ggtcccggtggagagaggggccttcccggtgagcgtggaaatccaggaagtccaggaaac
cccggacctaagggagaagatggagaaaccggagtccgcggagagaggggacagacaggc
tctatgggagaggctggtcgtccaggtccccccggaccccctggtgaggcgggtgcagtt
ggaccatctggacctgatggaaaatctggaccacctggaccttctggtccatctggtaac
gatggacgccccggcgagattggtgcccccggaccctcaggttccccaggacagcagggt
gctcaaggcccaactggagagagaggaaaccctggcaagtctggaaaccccggactacaa
ggtccacgtggaccctcaggcgacaacggaccaactggtgaaatgggcccccagggagca
cctggacccgagggagagcccggccctagaggcgctgagggaccccctggaggacctgga
ttccagggagctccaggtcttcccggcccccctggagaggctggaactgagggtgagccc
ggcacacccggaggacccggtcaaacaggacgcactggaaacaggggagagcgtggtttc
ccaggcgaacgcggaggtatgggacctgttggcgagcctggaccacccgggcaagttgga
cccgctggaaatgacggcgagagaggtattcccggagaaatcggtgtccagggtgacgtt
ggtccccagggacccatgggtatgccaggagagcgaggtcccggtggagaggcaggagct
aagggagacgatggtgaggcaggccctccaggccctgatggaaacactggccgacctggt
cttgctggtcccccaggagagcctggcccacctggtcttgccggtccccctgctgagaag
ggacaacctggtgaccctggctaccgtggacaatctggaccccctggtgcctctggagag
cgcggaaatgctggtcctgacggagagcccggataccccggtcttcccggtccttccgga
ggttcaggtatgaagggagaggcaggtctgcccggagctaagggagagcaaggagatggt
ggagcttctggtgagcccggaagtcagggaccagctggagttcctggtattcaaggtcgc
aagggtccccgaggagagcagggtgtggctggaatccccggtgaaccaggtgcccccgga
gccccaggatcccagggtctctctggtcaacaaggtctccctgggcccgctggaccctct
ggcactcctggtatcaagggatcacgtggatccactggcaacatgggacaggctggcaga
aatggtgcttccggacaacccggaaatccaggactgaagggtaaccgtggagaagacggt
tcacctggatcatctggaccccctggtccttcaggtgccgcaggagagcgcggtgagcca
ggtatgcctggaccacctggtgaaactggacccggaggaccccaaggacctaatggagct
cgtggaactaatggacgtcgtggtagcgatggacttcccggaaaagctggaccccccgga
cccgttggaggacccggcattaacggacccacaggaccatctggagctcccggagctgac
ggcgccgctggtcttccaggacgtcaaggcgaggctggacttgttggagatgccgggcga
gttggacccataggtctaccaggacttcagggacctgctggaccaagcggaccagtaggc
gaggcaggctcacgtggagaaaggggatcagttggacctgttggacccagaggaccccag
ggattgagaggttctcccggagttcaaggagagcaaggcattgatggcgagggtggagat
gccggacacactggagacaagggtgatccaggctacatgggacttcctggtctacctgga
cccgagggtccaattggagagaatggtccaccaggacctcgtggaccggctggagagaga
ggtaacgacggagtccgtggacaacctggcatagccggagaagatggacccgacggcccc
cgtggtgcccctggcccccgtggacccagtggagaagatggaagaaggggttccgccggt
cttcccggaaatccaggaccccccggaccaccaggagagagcgtgtacggccgtgctatt
accggctgggccaccggatccaagggccctggctacatgggtgatgtgccatctgcagag
ggtgaaccagaggaggcacgtaacgccatcaaggctctgaaggatgttgaagaggagatc
aagaaactgagggatcccactggaaccaaggacgccccaggacgtacctgccatgacctg
ctcaagaacaaccctgaaatcactaacggttggtacttcattgatcctaatggtggaggt
atcagtgatgcttttgaggccgaatgtatcttcaacggaaagaggactgagacctgctta
catccaatccaaactgggtatgagagacagcactggttcacaaggaaggagaaccccgag
gcccacgtgtggttcgctgaaaccttcgatgccaacggctttttcgactatggaatgcac
aagtctcaaattaagtacctacaccaaatgagcacccgtgctcgccaagacctcgcaatc
agctgcatgaacaccgtcgtcatctacgaccaagccgcaggcaaccacaagaaggctgtg
aggcttggcagtttcgacgaggaaatcatgggaccaattgccaagaaaccatacagattt
agagtaaagactgatacttgcaaggaatacagtggaaacgtgggacaaacactaatagaa
gtacgcggccgcggacaccgcatagaaagaatgccaattatggatgtaggactatatgat
gttgggggagaagatcaagaatttggtattgacatagggcccgcttgcttcagctga
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integrated database retrieval system
