Haliotis rubra (blacklip abalone): 124274345
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Entry
124274345 CDS
T07967
Name
(RefSeq) putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124274345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hrj03041
]
124274345
03009 Ribosome biogenesis [BR:
hrj03009
]
124274345
Enzymes [BR:
hrj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124274345
Spliceosome [BR:
hrj03041
]
Complex A
U2 snRNP components
U2 related factors
124274345
Complex B
124274345
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
124274345
Ribosome biogenesis [BR:
hrj03009
]
Eukaryotic type
90S particles
Helicases
124274345
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
nSTAND3
SRP54
ResIII
AAA_7
NACHT
Flavi_DEAD
T2SSE
TsaE
PhoH
AAA_29
Motif
Other DBs
NCBI-GeneID:
124274345
NCBI-ProteinID:
XP_046565665
LinkDB
All DBs
Position
Unknown
AA seq
735 aa
AA seq
DB search
MSKRHRIDVGDSHGKRTRDDDRDRDRDRDRDKDKDKDKPKSIFEQFNIPRPTLQMNPFTG
MPYSPRYYQLLNKRMTLPVWEYKEKFMEMMTKYQTIVLVGETGSGKTTQIPQWCLEWVRA
RYAKKAVACTQPRRVAAMSVAQRVSEEMDVGLGQEVGYNIRFEDCTSSKTVMKYMTDGML
LREAMSDPLLEAYGVIMLDEAHERTLATDILMGLLKEVAKQRSDLKIVVMSATLDAGKFQ
QYFDKAPLMSVPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEEGEGDILLFLTGQEE
IDEACKRLAREVDNLGPDVGNLKCIPLYSTLPPAQQQRIFEPAPAKKPNGAIGRKVVVST
NIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRTQPGKC
FRLYTEKAYKQEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETLMRALE
LLNYLAALDDDGEITELGSMMAEFPLDPQLAKMVIASCDFSCSNEILSITAMLSVPQCFV
RPAEAKKPADEAKMRFAHIDGDHLTLLNVYHAFKQNQEDQQWCYDNFINFRSLKSADNVR
QQLARIMDRFNLRRSSTDFTSRDYYINIRKALVSGYFMQIAHLERTGHYLTVKDNQVVQL
HPSTVLDHKPEWVLYNEFVLTTKNYIRTVTDIKPEWLIKIAPQYYDMSNFPNCEARRMLE
RIIAKLESKQYQEGF
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggcatcgcattgatgtgggcgactctcacggcaaaaggacaagagatgat
gaccgagacagagacagggaccgcgacagggacaaggataaggacaaggacaagcccaag
tccatatttgagcagttcaacatcccgagacccactctgcaaatgaatcccttcacaggg
atgccctactctccccggtactaccagctgctcaacaagcgtatgacactgccagtatgg
gagtacaaggaaaagttcatggagatgatgaccaaatatcagaccattgtgctcgtggga
gaaactggctctggtaaaacaacacagatcccccagtggtgtctggagtgggtgcgagct
cggtacgccaagaaggcagttgcctgtacacaacctagaagggtggcagccatgtctgtg
gctcagcgtgtgtcggaggagatggatgtcggtctggggcaggaagtgggctacaacatc
cgttttgaggattgtacctcatcgaaaacagtcatgaagtacatgactgatggtatgttg
ctgagagaggccatgtcagaccccctgctggaagcttacggagtcatcatgttggatgaa
gctcacgagcgtaccctggcaacagacatcctcatggggctgctgaaggaggtggccaaa
cagcgatcagatctcaagatagttgtgatgagtgctaccctcgatgctggcaaatttcag
caatactttgacaaggccccgttgatgagtgtccctggtcgtacacatcctgtggagatc
ttctacacccccgagcctgagcgggattatctggaggctgccatcaggaccgttgtacag
atccacatgtgtgaggagggagagggagacattcttctctttctgacaggccaggaggag
attgacgaggcatgcaagagattagcccgtgaggtggacaacctgggacctgatgttggc
aatttgaagtgtatccccctgtactccaccctccccccggcccagcaacagcgcatcttc
gaacctgctccggccaagaaaccaaatggggccatcggcaggaaggtggtcgtctccacc
aacattgctgaaacatccctgacaattgatggtgttgtgtttgtgatagaccctggcttt
gctaaacaaaaggtgtataacccccgtatccgagtggagtccctcctggtgacagctatc
agtaaggccagtgcccagcagcgagctggccgagctggccggacacagcctgggaagtgt
ttccgtctgtacacagaaaaggcctacaaacaggaaatgcaggacaacacatacccagag
atcctccggtcgaacctcggctctgtggttctgcagctcaagaagctgggtatcgatgat
cttgtgcactttgacttcatggatccacctgctcctgagacgttgatgagagccttggag
ttgttgaactacctggctgcactggatgatgacggagagatcacagaactcggctccatg
atggcagagtttccgctggatccccagctggctaaaatggttattgccagctgtgatttc
agctgttccaacgagattctgtcgataacagccatgttgtcagtcccgcagtgctttgtg
cgacctgctgaggccaagaaacctgcggacgaggctaagatgaggttcgcccacatcgat
ggtgatcacctcactctgctcaacgtctaccacgctttcaagcaaaaccaggaagaccag
caatggtgctacgacaacttcattaactttcggtcactgaagagcgcagacaatgtgcgg
cagcagctggctcgcatcatggaccgcttcaacctgcggcgatcaagcaccgacttcacc
agccgtgactactacatcaacatcaggaaggctttagtctcaggatacttcatgcagatc
gctcacttggaacggactggtcactacctgacagtgaaggacaaccaggttgtacagctt
cacccatccaccgtgttggaccacaagccggagtgggtgctctacaatgagtttgtgctc
accaccaagaactacatcaggactgtcacagacatcaagccagagtggttgatcaagatt
gcgccgcagtactacgacatgtccaacttccccaactgtgaagcccgccggatgctggag
aggattattgccaaattggagagcaagcagtaccaagagggcttttga
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integrated database retrieval system
