Haliotis rubra (blacklip abalone): 124277940
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Entry
124277940 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-2(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj04382
Cornified envelope formation
hrj04512
ECM-receptor interaction
hrj04518
Integrin signaling
hrj04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
124277940
04518 Integrin signaling
124277940
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
124277940
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
124277940
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hrj04147
]
124277940
00536 Glycosaminoglycan binding proteins [BR:
hrj00536
]
124277940
Exosome [BR:
hrj04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
124277940
Glycosaminoglycan binding proteins [BR:
hrj00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
124277940
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
124277940
NCBI-ProteinID:
XP_046569616
LinkDB
All DBs
Position
Unknown
AA seq
1829 aa
AA seq
DB search
MILCCSGASPVAGTANLFHTHRVPSSSRRIKAMSTWLLLCISVVALGTLSQGVSAQRRRG
DVDTKPCGAGCETGGNCRCIGEKGSRGAPGAIGPSGPQGNQGFPGPEGLPGPKGMKGDIG
PNGPLGEKGARGKMGSPGFSGINGIPGFPGPPGPRGATGLDGCNGTQGDPGSPGLPGIPG
EAGTPGQDGIPGLKGEPSVAGVTLPGQKGEPGADGLPGLPGSHGRDGPIGPKGEPGLAGP
PGPFGDRGPPGEKGNMGLGTHGEKGQKGSTGPPGNPGPPGGLGALTNPPGQIQGPKGLKG
MLGDEGMKGEPGLPGMKGPAGLQGLPGPPGMVGEKGVPGIAGPRGKQGYPGVPGQPGQKG
DRGMDGLPGVAGLGGMKGDRGLSGVDGLRGQRGPPWSSRISFWSNCGPGGDGPPGPVGPA
GPRGLPGDPGLPGLPGPQGQRGNDGPFGGPGIPGVPGTQGLDGPKGDRGDSGVPGIAGLD
GRPGTPGLSGQKGEPGFPGEGGASIPGVRGPSGLPGLDGIPGVKGERGPKGLPGPPGNST
KGLPGPSGPKGEKGQGGFSGLPGRDGLPGLPGDKGDRGGSCSLCQNGLKGEKGLSGLDGL
PGQPGVPGEPGPVGTKGEPGEDGPPGLSGLPGLRGEDGLPGLPGIQGIKGEDARAEVIPG
PEGFKGERGDVGLPGESGRRGLPGPQGPPGAPGLPGIKGERGTKGLPGLDGRPGNSGEPG
IPGSRGQPGLGVPGFPGDRGDPGVSGLPGLPGMKGTKGEAGFLPNNVWDTLKGEQGEPGL
SGPSGIPGMPGLSGQKGNPGLPGNSGLDGLPGFKGESGLPGLPGLSGPRGLPGPRGDKGE
PGLPGLSGPNGLKGDGGLSGLPGIAGLKGETGFPGEPIVGPKGEAGLPGLPGGKGLVGYA
GPEGLRGAPGLTGLKGESGQPGLPGLDGLPGVKGEPGLDGQPGFPGNDGPEGLPGLPGEP
GSKGDSGLPGLPGLSGPKGESGEPGPAGQSGLPGLSGVRGPPGQSGQDGLPGLPGVKGDP
GLMGFPGEPGRDGLPGLQGLAGLKGETGAAGFPGESGREGIRGSKGSGGLPGLPGLKGDA
GEAALPGLPGDRGEDGLPGIPGERGQDGLPGLSGDKGSPGEPGVGQPGRDGEPGVPGRDG
EPGLPGLGGPKGNPGPVGFPGLKGERGQPGLDGRPGQPGRDGLSGMKGNSGLPGLPGAPG
SKGESGLPGLPGTSGLKGDAGLDGRPGLPGLSGPKGDRGFNGRDGEPGLPGLKGDGGDSG
LPGLPGLSGAKGSPGLSGLPGAPGGKGEPGFPGLDGLPGQSGLPGERGLDGPAGPPGLPG
RSTQGLKGEPGRLGQPGNDGRPGLKGDPGMPGLDGLPGVKGEPGQSSDGRPGLKGEPGLP
GRAGLPGESGQRGNDGLPGLPGLKGDRGQNGFPGEQGRDGLPGLSGSKGILYKTNVTILN
LSELPLMQVTLACLDSPGISGGKGDSGLPGLPGILGPKGEAGLPGLSGRDGTPGQPGAFG
LKGEPGLPGVVNYEQLPKGDRGFKGDPGLNGLPGLSGSKGESGRPGSPGIPGEPGPSGLP
GFKGERGTQGLRGLDGLPGTAGTPGQRGPSGLPGDRGLPGRSPPTGFLLVRHSQSQQVPS
CPRGQAQMWDGYSLLYIEGNEKSHHQDLGWAGSCMPRFSTMPFLFCNVDNVCNYASRNDR
SYWLSTTAPIPMMPVAEGEIRPYISRCVVCDAPANVIAVHSQTLQIPDCPNGWNGLWIGY
SFAMHTAAGPGGGGQSLSSPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTIELNE
QFSSPRSQTLKAGNLRTRVSRCQVCIKNV
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgattttgtgttgctcgggtgccagtcccgtggctggcactgccaacctctttcataca
catagagtaccgagttcgtcccgtagaattaaggccatgtctacatggctgcttctctgc
atctctgtggtcgccttagggaccctttctcaaggcgtcagcgcacaaagaagaagaggt
gatgtagataccaaaccatgtggagctggctgcgagactggaggaaactgcagatgtata
ggagaaaaaggctccaggggtgcaccaggagccattggtccttctggtccacaaggtaac
caaggcttccctggacccgaaggccttcctggacccaaggggatgaagggtgatattggt
cctaatggaccacttggagaaaagggagccaggggtaagatggggtcacctggcttctct
ggcatcaacggtattcctggattccctggcccacctggacctcggggtgctactggtctg
gatggttgcaatggaactcagggagatcctggatctcctggtctgccaggtattcccgga
gaagctggtacacctggtcaagatggtattcctggtcttaagggagagccatcagttgct
ggagtaaccctcccaggacagaagggagagcctggagcagatggcctacccgggttgcct
ggaagtcacggaagagatggacccattggccccaaaggagaacctggcttagcaggacca
ccaggtccctttggtgaccgaggacccccaggagagaaaggtaacatgggtttgggcact
catggagaaaagggccagaaaggttccactggacccccaggcaaccctggacccccaggt
ggtctaggagctctcaccaatcctccaggacaaatccaaggacctaagggactgaagggc
atgcttggagatgagggtatgaagggtgaacctggtctgcctggcatgaagggacctgct
ggtctgcagggcctacctggtccaccaggaatggttggtgagaagggcgtacctggcatt
gcaggtcctcgtggtaaacaaggttatccgggggttcctggtcaacctggacaaaagggt
gaccgcggtatggatggtctccctggtgtagctggccttggtggtatgaagggagatcgt
ggtctgtctggtgttgatggtcttcgtggtcagagaggtcccccctggtccagcaggata
tctttctggtcaaactgtggacctggaggagatggtccacctggtccagttggacccgct
ggtccacgtggtctgcctggtgatccaggactgccaggcctccctggaccacaaggtcag
cgtggtaatgatggtccatttggtggtcctggaatccctggtgtgcctggtactcaaggt
cttgatggccccaagggagatagaggagattctggagttccaggtattgctggactggat
ggtcgccctggtactcctggtctatctggacagaagggagagcctggtttcccaggtgaa
ggtggagcaagtattcctggtgtcaggggaccatctggtttgcctggtctggatggtatt
cctggggtgaagggagagagaggtcctaaaggtctgcctggtccacctggaaattctacc
aagggtttgcccggcccctcaggtcccaagggagagaagggtcagggaggtttctctggt
ttgcctggtcgtgatggtcttcccggtctccctggagataaaggtgatcgtggtggttcc
tgcagcctttgtcagaatggtcttaagggagagaaaggtctgtctggtctagatggtctg
cctggacagcctggtgtaccaggtgagccaggaccagttggaaccaagggagagcctggc
gaggatggtcctccaggtctgtctggcctgcctggtctcaggggtgaggatggtctgcct
ggcctgcctggtattcaaggtatcaaaggagaagatgcaagagcggaggtcattcctggg
cctgagggtttcaagggtgagcgtggtgatgttggtcttcctggtgagtctggtcgccga
ggtctccctggaccacagggaccccctggggctcccggtctgcctggaatcaagggagag
aggggaacaaaaggccttcctggtttagatggtcgccctggcaactcaggagaacctggt
attcctggctcaagaggccagcctggacttggtgtgcccggtttccctggtgaccgtggt
gacccaggagtgtctggtctgcctggtcttcctggtatgaaaggaacgaagggagaagca
ggatttcttcccaataacgtctgggacacattgaagggagaacaaggagaaccaggcctg
tccgggccatcaggtattcctggcatgccaggtttgtcaggacagaagggaaatccaggt
ttgcctggcaactctggtttggatggcctacccggatttaagggagaatctggtctgcct
ggtttacctggcttgtctggtccaagaggtcttcctggtccacgaggggacaaaggagaa
ccaggattgccaggattgtcaggaccaaatggactgaaaggagatggtggtctttctggt
cttccaggcattgcagggttgaagggagagactggtttccctggagaacctattgtggga
cccaagggagaagctggtttgcctggtctgcctggaggaaaaggacttgttggttatgct
ggcccagaaggtctgcgtggtgcccccggcttgactggtctcaagggtgaatctggccag
cctggtttgcctggtcttgatggtcttcctggtgtgaaaggggagcctgggctggatgga
caacctggatttcctggaaacgatggaccagagggtctgcctggacttcctggtgagcct
ggcagtaagggtgactctgggctgcctggcctccctggactctctggaccaaagggcgag
tctggtgaacctggacctgctggacaatctggccttcctggactttctggcgtcagagga
ccacccggacaaagcggtcaagatggtttgcctggactgccaggtgtgaagggtgatcct
ggactgatgggtttccctggtgaacctggacgtgatggtctgcctggtcttcagggtttg
gctgggctcaagggagaaactggtgcagctggcttccctggtgaaagtggtcgtgaaggc
attagaggatcaaagggtagtggtggtctgcctggcctgcctggtctgaagggagatgct
ggagaggcagcactacctggacttcctggtgaccgaggcgaagatggtctacctggaata
cctggggaacgtggacaggacggtctgcctggtctgtctggagataaaggaagcccaggg
gagcctggtgtcggccagcctggcagagatggtgaacctggagtgccaggacgtgatgga
gaacctggacttcctggtcttggaggaccaaagggaaatcctgggcctgtaggattccct
ggtctaaagggagagaggggacagcctggtcttgatggtcgccctggccagcctggaaga
gatggtctgtctggaatgaaaggaaactctggccttcctggcctgcctggtgctcctggt
agcaagggagagtctggtctgcctggcctaccaggtacttctggccttaagggtgatgca
ggtctggatgggcgtccaggtctccctggtttgtctggtccaaagggagacagaggattc
aatggtcgggatggagagccaggacttcctggacttaagggagatgggggtgactcaggc
ctgcctgggctcccaggtttgtctggagctaagggatcacctggtctgtctggtctgccc
ggagctccaggagggaagggtgagcctgggttcccaggtcttgatgggcttcctggtcaa
tcaggactaccaggagagagaggtctggatggccctgccggtccccctggtctgcctggt
cgctccacacagggtctgaagggagagcctggacgtttaggccagcctggtaatgatgga
cgtccaggactgaagggagatccaggtatgcctggacttgatggcctgcctggtgtaaag
ggtgaacctggacaatcctctgatggtcgtcctggacttaagggagagcctggacttcct
ggacgagctggtctgcccggagagagtggacagcgtggtaacgatggcctgcctggttta
cctggtcttaagggtgaccgcggacagaacggattccccggagagcaaggacgcgatggc
cttcctggtctaagtggatccaaggggatattgtataagacaaacgtaaccatattgaat
ctttctgaattacctttaatgcaggtaactctggcttgcctggactcccctggtatctct
ggtgggaagggagatagtggtcttcctggtcttcctggaatcctgggaccaaagggagaa
gctggtctacctggtctgtctggtcgggatggaacaccaggtcaacctggtgcctttggt
ttgaagggagagcctggtttgcccggtgttgtgaattacgaacaacttcctaaaggagat
cgaggattcaagggagaccctggtctgaatggtctgccaggtctctctggatccaaggga
gaatcaggacgccctggatctcctggtatccccggtgagcctggtccaagtggtctgcca
ggattcaagggagagcgtggtacccaaggtctacgaggtctcgacggtctgcctggaact
gcaggaacaccaggtcagcgtggtccatctggtttgcctggtgaccgtggtctacctgga
cgttccccacccactggcttcctccttgtgcggcactcccagtctcagcaagtacccagc
tgccccaggggtcaagcccagatgtgggatggttacagcttgctctatattgaaggaaat
gaaaagtcacaccaccaggacctaggatgggccggatcctgcatgccacgtttcagcacc
atgcctttcttgttctgtaacgtggacaatgtttgcaactacgccagcagaaatgacagg
tcctactggctttcaacaactgctcctattcccatgatgcctgtagctgagggagaaatc
cgtccatatatcagtcgctgtgttgtatgcgatgctcctgctaatgtgattgctgtccac
agtcaaacactgcagataccagattgtcccaatggttggaacggactctggataggatac
agttttgctatgcatacagcagcaggccctggtggtggcggccaatctctctccagccct
ggcagttgtcttgaagacttccgagccactccattcattgaatgtaatggtgctcgtggc
acatgtcattactttgctaataaatacagcttctggctcactactatagaattaaatgaa
caatttagttcaccacgttcacaaacacttaaagcaggaaacctccggactagagttagt
agatgtcaagtttgcatcaaaaatgtgtga
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integrated database retrieval system
