Haliotis rubra (blacklip abalone): 124278499
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Entry
124278499 CDS
T07967
Name
(RefSeq) LOW QUALITY PROTEIN: PAN2-PAN3 deadenylation complex subunit pan3-like
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
hrj
Haliotis rubra (blacklip abalone)
Pathway
hrj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hrj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124278499
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hrj03019
]
124278499
Messenger RNA biogenesis [BR:
hrj03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124278499
mRNA degradation factors
3'-5' decay
Pan complex
124278499
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf_CCCH_4
zf-CCCH_4
Pkinase
zf-CCCH_2
zf-CCCH_9
Torus
TBPIP
Motif
Other DBs
NCBI-GeneID:
124278499
NCBI-ProteinID:
XP_046570199
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MTSAVPPGKKAALCRYYLNTGSCIYGDECQFLHQAPPGMQNSYSNGPSSSNGEPGLESMP
NNGDQYFNATFGSIPEFQPFSGRQRPRSRNSVLGSLSQNAKPFVPAGPPGPPGPGGLDQN
MANDFQALNLAGTPVPPGKGTPADLLKSAASLSHSSSTPSFTPYSSMFNTSTSSTPTSHI
AASSVYSSASPNHSPGISPSGSPLTLRRTASPVAPLRQTTVPQKPQQHPQAPGGGPGGPG
GPGGPGGPGGGGGTIQENFGGTTYFYHPDDFAPQYEGVQLPNFTMYPGLPPHIAHMKVKV
NMPQFFMPDEIKMELLNRHALTLAQIDPTQNPDVPTEVDNYHNLXPLEPPPTTQLPKSST
FTYPTTCYKALNTKDGLTYCLRRVHGFRLANAKCMPLIDMWKKMFHPNIVQLKEVFTSKA
FGDNSIIFVYDYFPGAETLMSRHFNTPPTMNGYSSPFQGGEGPPPGAGARPYSAGKGTGA
SANNSGMNGPRQHAGLLPESLIWTYVVQLSSALRAIHATGLACRALDPTKILVYSKSRMR
LNCMGIMDVLTFDSNQANPLALIPHYQQEDLVALGRICLALACNNIMGVQRDHLPAAMDL
VARNYSPDLKNLILYLLTNQNRPRSINDVMPMIGARFFTQLDAAQLRTDVLENELAKEVE
NGRLFRLLVKLGAINERPEFNMDPSWSETGDRYILKLFRDYLFHQVDESGAPWIDLAHVI
QCVNKVDAGVPEKICLMSRDEQSILVVSYAEIKRCFESAFSELLNAGHQPSPFS
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgacaagtgcggttccccctggaaaaaaggccgcactatgccgctattacttaaacacg
gggtcatgtatttatggggatgagtgtcaatttctacatcaagcccctccaggaatgcaa
aattcgtattcgaacggacccagttcctcaaatggagaaccaggtctggagtcaatgcct
aacaatggggatcagtatttcaatgctacctttggttccataccagagttccagcctttc
tcagggagacaaaggccaagatcaagaaacagcgtgcttggatccctgtcccagaatgcc
aagccatttgtccccgcagggccaccgggtcccccagggcctggggggttggatcaaaac
atggccaatgactttcaagcgttgaacctggcaggaacccctgttcccccagggaagggt
accccggctgacttattgaagtcagcagcatctttgtctcacagttccagcactccatct
ttcactccgtactcttccatgttcaacacttccacgtcatccactcccacaagtcacata
gctgccagtagtgtttactcatctgccagtccaaatcacagccctggtatatctccaagt
ggttccccactgacactgagaagaactgcatcacctgtggctccactgcgacagactaca
gtgccccagaaacctcagcagcacccacaggcaccaggagggggacccggtgggccagga
ggacctgggggaccggggggacctggaggtgggggaggcacaatccaggaaaactttgga
gggacaacctacttctaccatcccgatgattttgctcctcagtatgaaggagtgcaactg
ccaaatttcaccatgtacccagggctgcctccacacattgctcacatgaaggtcaaggtt
aacatgccacagttcttcatgccggatgaaatcaagatggaacttctaaacagacatgct
ttaacactggcacaaattgaccctactcagaatccagatgtaccgacggaggtggacaac
taccacaacctgnttcccctggagccaccgcccaccacccagctccccaagtccagcacc
ttcacatatcccaccacctgctacaaggctctcaacaccaaagatggacttacatactgt
cttaggagggttcatggcttccgattggctaacgcaaagtgtatgccgctgattgacatg
tggaagaagatgtttcatcccaacattgtgcaattgaaggaggtcttcacctctaaagct
ttcggtgataactctattatctttgtgtatgactacttccctggagccgagaccctgatg
tcacgccatttcaacacaccgcccacaatgaatggttacagcagccccttccagggtggg
gaagggcccccaccaggagcaggagctcgcccctatagtgctgggaaagggacaggagca
agtgccaacaactctggcatgaatggccctcgccaacatgctggcctgctgcccgagtca
ctcatctggacctatgtcgtccagctgagttccgcactccgtgccatacatgccactggc
ctcgcttgtcgggccctagaccctaccaagatccttgtctacagcaagtccaggatgcgg
ctgaactgcatggggattatggatgttctgacgtttgacagtaaccaggccaacccactt
gctttgataccacactaccagcaagaggatctggttgccctcggacgcatctgtctggcg
cttgcctgtaacaacatcatgggggtacaacgagatcacctgccggcagccatggatctt
gttgccaggaactactcacctgacctgaaaaatctcatcttgtatcttctgaccaatcag
aatagaccaagaagtatcaatgacgtgatgccaatgattggagcccgattctttactcag
cttgatgctgctcaacttcgaacagatgtgttggagaatgagttggccaaggaagtagaa
aatggccgcctattccgtctgctggtgaaacttggtgcaattaacgagagacctgagttc
aacatggatccaagctggtcagaaactggagatcgctacatcttgaagctgtttcgtgat
tacttgttccaccaagtggatgagagtggtgcaccatggattgatcttgctcatgtcatt
cagtgtgtcaataaagttgatgcaggtgtcccagagaagatttgcttgatgtcgagagac
gaacagagcatccttgtcgtgtcctacgctgaaatcaaaagatgttttgagagtgctttc
tctgagctgttgaatgccggacaccaaccgtccccattctcatag
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